Variant report

Variant	rs17079064
Chromosome Location	chr6:150255029-150255030
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CTCF	chr6:150254940-150255090	BE2_C	brain:	n/a	chr6:150254998-150255011
2	CTCF	chr6:150254920-150255070	HCPEpiC	choroid plexus:	n/a	chr6:150254998-150255011
3	JUN	chr6:150254944-150255934	K562	blood:	n/a	chr6:150255541-150255554
4	CTCF	chr6:150254878-150255886	A549	lung:	n/a	chr6:150254998-150255011
5	CTCF	chr6:150254880-150255030	BJ	skin:	n/a	chr6:150254998-150255011
6	CTCF	chr6:150255012-150255889	HCT-116	colon:	n/a	n/a
7	CTCF	chr6:150254940-150255090	WI-38	lung:	n/a	chr6:150254998-150255011
8	CTCF	chr6:150254940-150255090	HFF-Myc	foreskin:	n/a	chr6:150254998-150255011

Variant related genes	Relation type
ENSG00000216621	TF binding region

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10499261	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.93[GIH][hapmap];0.81[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes]
rs12523670	0.81[AMR][1000 genomes]
rs12524576	0.84[CHD][hapmap]
rs12529569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.81[JPT][hapmap];1.00[TSI][hapmap]
rs12662588	0.83[AMR][1000 genomes]
rs12664934	0.95[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs1535955	0.91[CHB][hapmap];0.88[CHD][hapmap]
rs17079068	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17079076	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17079081	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17079083	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17079087	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17079117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs17079127	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap];0.84[AMR][1000 genomes]
rs17079130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.80[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs2018074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs2343264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs4084448	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs4133317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.90[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4273697	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4283897	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4354166	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4425606	0.95[CHB][hapmap];0.93[CHD][hapmap]
rs4473866	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4504486	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.90[JPT][hapmap];0.88[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4591860	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57923090	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59712181	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60324886	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61233579	0.89[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs6557194	0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6557200	0.82[CHD][hapmap]
rs7740713	1.00[CEU][hapmap];0.86[AMR][1000 genomes]
rs7744918	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];0.87[GIH][hapmap];0.86[JPT][hapmap];0.92[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes]
rs7745903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap]
rs7760608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.84[AMR][1000 genomes]
rs7764321	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs7767362	0.86[AMR][1000 genomes]
rs9791229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150254200-150256000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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