Variant report

Variant	rs17079087
Chromosome Location	chr6:150263333-150263334
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:150263150..150264777-chr6:150325600..150328449,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000218358	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10499261	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12524576	0.81[ASN][1000 genomes]
rs12529569	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs12664934	0.80[AMR][1000 genomes]
rs1535955	0.90[CHB][hapmap];0.83[JPT][hapmap]
rs17079064	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17079068	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17079076	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079081	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079083	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079117	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17079127	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17079130	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.81[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2018074	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs2343264	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs4084448	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4133317	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4273697	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4283897	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4354166	0.86[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4425606	0.89[CHB][hapmap]
rs4473866	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4504486	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4591860	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57923090	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59712181	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60324886	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61233579	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6557194	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7740713	1.00[CEU][hapmap];0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7744918	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7745903	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap]
rs7760608	1.00[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7764321	0.86[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7767362	0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9791229	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3332714	chr6:150259037-150275045	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv970174	chr6:150262064-150263659	Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17079087	ULBP2	cis	multi-tissue	Pritchard

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150261400-150264000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:150262400-150263400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr6:150262400-150263400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
4	chr6:150262400-150263400	Active TSS	Right Ventricle	heart
5	chr6:150262400-150263400	Active TSS	HSMM	muscle
6	chr6:150262400-150263600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
7	chr6:150262400-150263600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
8	chr6:150262400-150263800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr6:150262400-150263800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
10	chr6:150262400-150263800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:150262400-150263800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
12	chr6:150262400-150263800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr6:150262400-150263800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr6:150262400-150263800	Active TSS	Brain Angular Gyrus	brain
15	chr6:150262400-150263800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
16	chr6:150262400-150263800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
17	chr6:150262400-150263800	Active TSS	HSMMtube	muscle
18	chr6:150262400-150264000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:150262400-150264000	Bivalent/Poised TSS	Fetal Brain Female	brain
20	chr6:150262400-150264000	Active TSS	NHLF	lung
21	chr6:150262600-150263400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr6:150262600-150263400	Flanking Active TSS	Primary B cells from cord blood	blood
23	chr6:150262600-150263400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
24	chr6:150262600-150263400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr6:150262600-150263400	Active TSS	Pancreas	Pancrea
26	chr6:150262600-150263400	Active TSS	HUVEC	blood vessel
27	chr6:150262600-150263400	Active TSS	NHEK	skin
28	chr6:150262600-150263600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
29	chr6:150262600-150263600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
30	chr6:150262600-150263600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr6:150262600-150263600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
32	chr6:150262600-150263600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
33	chr6:150262600-150263600	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
34	chr6:150262600-150263600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr6:150262600-150263600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr6:150262600-150263600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain
37	chr6:150262600-150263600	Bivalent/Poised TSS	Brain Substantia Nigra	brain
38	chr6:150262600-150263600	Bivalent/Poised TSS	Pancreatic Islets	Pancreatic Islet
39	chr6:150262600-150263600	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
40	chr6:150262600-150263600	Flanking Bivalent TSS/Enh	Fetal Thymus	thymus
41	chr6:150262600-150263600	Active TSS	Left Ventricle	heart
42	chr6:150262600-150263600	Flanking Active TSS	Ovary	ovary
43	chr6:150262600-150263600	Bivalent/Poised TSS	Rectal Mucosa Donor 29	rectum
44	chr6:150262600-150263600	Active TSS	Right Atrium	heart
45	chr6:150262600-150263600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
46	chr6:150262600-150263800	Flanking Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
47	chr6:150262600-150263800	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
48	chr6:150262600-150263800	Bivalent/Poised TSS	HUES48 Cell Line	embryonic stem cell
49	chr6:150262600-150263800	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
50	chr6:150262600-150263800	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung

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