Variant report

Variant	rs17079068
Chromosome Location	chr6:150259951-150259952
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:97)
CpG islands
(count:61)
Chromatin interactive
region (count:6)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:97 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:150259842-150260886	H1-neurons	neurons:	n/a	n/a
2	POU2F2	chr6:150259634-150260290	GM12878	blood:	n/a	n/a
3	ESRRA	chr6:150259409-150261022	GM12878	blood:	n/a	n/a
4	MAX	chr6:150259494-150260357	MCF-7	breast:	n/a	n/a
5	MAX	chr6:150259478-150260211	A549	lung:	n/a	n/a
6	STAT5A	chr6:150259607-150260650	GM12878	blood:	n/a	chr6:150260046-150260057 chr6:150260395-150260403
7	EP300	chr6:150259897-150260370	GM12878	blood:	n/a	n/a
8	RELA	chr6:150259888-150260347	GM10847	blood:	n/a	n/a
9	MTA3	chr6:150259775-150260314	GM12878	blood:	n/a	n/a
10	EP300	chr6:150259723-150260391	GM12878	blood:	n/a	n/a
11	RELA	chr6:150259874-150260309	GM18505	blood:	n/a	n/a
12	FOXM1	chr6:150259807-150260381	GM12878	blood:	n/a	n/a
13	SP1	chr6:150259854-150260342	GM12878	blood:	n/a	chr6:150260201-150260210
14	NFATC1	chr6:150259834-150260298	GM12878	blood:	n/a	n/a
15	MTA3	chr6:150259483-150260474	GM12878	blood:	n/a	n/a
16	IRF4	chr6:150259824-150260307	GM12878	blood:	n/a	n/a
17	TCF3	chr6:150259487-150260386	GM12878	blood:	n/a	chr6:150260307-150260320
18	PAX5	chr6:150259724-150260282	GM12878	blood:	n/a	n/a
19	PML	chr6:150259565-150260502	GM12878	blood:	n/a	n/a
20	MAX	chr6:150259555-150260120	A549	lung:	n/a	n/a
21	POLR2A	chr6:150259567-150260354	GM12892	blood:	n/a	n/a
22	RELA	chr6:150259779-150260326	GM19193	blood:	n/a	n/a
23	ZNF143	chr6:150259756-150260374	GM12878	blood:	n/a	n/a
24	TCF3	chr6:150259933-150260102	GM12878	blood:	n/a	n/a
25	POLR2A	chr6:150259790-150260085	GM12878	blood:	n/a	n/a
26	POLR2A	chr6:150259780-150260553	GM12878	blood:	n/a	n/a
27	MAX	chr6:150259736-150259952	K562	blood:	n/a	n/a
28	RELA	chr6:150259786-150260329	GM12878	blood:	n/a	n/a
29	E2F6	chr6:150259917-150260044	K562	blood:	n/a	n/a
30	ATF2	chr6:150259804-150260315	GM12878	blood:	n/a	n/a
31	MXI1	chr6:150259664-150260350	GM12878	blood:	n/a	n/a
32	POLR2A	chr6:150259843-150260583	H1-neurons	neurons:	n/a	n/a
33	BATF	chr6:150259890-150260217	GM12878	blood:	n/a	n/a
34	E2F6	chr6:150259613-150259955	H1-hESC	embryonic stem cell:	n/a	chr6:150259811-150259821
35	E2F6	chr6:150259485-150260203	A549	lung:	n/a	chr6:150259811-150259821
36	STAT1	chr6:150259816-150260284	GM12878	blood:	n/a	chr6:150260046-150260057
37	EP300	chr6:150259648-150260398	GM12878	blood:	n/a	n/a
38	POLR2A	chr6:150259741-150260261	GM12891	blood:	n/a	n/a
39	PML	chr6:150259914-150260155	GM12878	blood:	n/a	n/a
40	CHD2	chr6:150259732-150260318	GM12878	blood:	n/a	n/a
41	YY1	chr6:150259758-150260308	GM12878	blood:	n/a	n/a
42	MAX	chr6:150259547-150260053	K562	blood:	n/a	n/a
43	SUZ12	chr6:150259426-150261085	NT2-D1	testis:	n/a	n/a
44	EP300	chr6:150259887-150260320	GM12878	blood:	n/a	n/a
45	BCL3	chr6:150259901-150260245	GM12878	blood:	n/a	n/a
46	PAX5	chr6:150259909-150260276	GM12878	blood:	n/a	n/a
47	CEBPB	chr6:150259875-150260421	GM12878	blood:	n/a	n/a
48	MAZ	chr6:150259724-150260346	GM12878	blood:	n/a	n/a
49	MAX	chr6:150259610-150260406	GM12878	blood:	n/a	n/a
50	STAT5A	chr6:150259853-150260302	GM12878	blood:	n/a	chr6:150260046-150260057

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:150259930-150259980	AG04449	skin:	fetal
2	chr6:150259930-150259980	MCF10A-Er-Src	breast:	n/a
3	chr6:150259930-150259980	K562	blood:	n/a
4	chr6:150259930-150259980	NB4	blood:	n/a
5	chr6:150259930-150259980	HCPEpiC	choroid plexus:	n/a
6	chr6:150259930-150259980	GM06990	blood:	n/a
7	chr6:150259930-150259980	Caco-2	colon:	n/a
8	chr6:150259930-150259980	HCT-116	colon:	n/a
9	chr6:150259930-150259980	GM12878	blood:	n/a
10	chr6:150259930-150259980	U87	brain:	n/a
11	chr6:150259930-150259980	Hela-S3	cervix:	n/a
12	chr6:150259930-150259980	NH-A	brain:	n/a
13	chr6:150259930-150259980	LNCaP	prostate:	n/a
14	chr6:150259930-150259980	AG09319	gingival:	n/a
15	chr6:150259930-150259980	A549	lung:	n/a
16	chr6:150259930-150259980	HCM	heart:	n/a
17	chr6:150259930-150259980	AG09309	skin:	n/a
18	chr6:150259930-150259980	HepG2	liver:	n/a
19	chr6:150259930-150259980	NHDF-neo	bronchial:	n/a
20	chr6:150259930-150259980	MCF-7	breast:	n/a
21	chr6:150259930-150259980	HUVEC	blood vessel:	n/a
22	chr6:150259930-150259980	SK-N-SH_RA	brain:	n/a
23	chr6:150259930-150259980	SKMC	muscle:	n/a
24	chr6:150259930-150259980	NHBE	bronchial:	n/a
25	chr6:150259930-150259980	SK-N-SH	brain:	n/a
26	chr6:150259930-150259980	AG10803	skin:	n/a
27	chr6:150259930-150259980	PrEC	prostate:	n/a
28	chr6:150259930-150259980	HL-60	blood:	n/a
29	chr6:150259930-150259980	Jurkat	blood:	n/a
30	chr6:150259930-150259980	RPTEC	kidney:	n/a
31	chr6:150259930-150259980	SAEC	small airway:	n/a
32	chr6:150259930-150259980	GM19239	blood:	n/a
33	chr6:150259930-150259980	BE2_C	brain:	n/a
34	chr6:150259930-150259980	T-47D	breast:	n/a
35	chr6:150259930-150259980	HRE	kidney:	n/a
36	chr6:150259930-150259980	HRPEpiC	eye:	n/a
37	chr6:150259930-150259980	HIPEpiC	eye:	n/a
38	chr6:150259930-150259980	HCF	heart:	n/a
39	chr6:150259930-150259980	HMEC	breast:	n/a
40	chr6:150259930-150259980	PANC-1	pancreas:	n/a
41	chr6:150259930-150259980	HAEpiC	amniotic membrane:	n/a
42	chr6:150259930-150259980	GM12891	blood:	n/a
43	chr6:150259930-150259980	SK-N-MC	brain:	n/a
44	chr6:150259930-150259980	Hepatocyte	liver:	n/a
45	chr6:150259930-150259980	ovcar-3	ovarian:	n/a
46	chr6:150259930-150259980	AoSMC	blood vessel:	n/a
47	chr6:150259930-150259980	IMR90	lung:	fetal
48	chr6:150259930-150259980	ProgFib	skin:	n/a
49	chr6:150259930-150259980	HNPCEpiC	eye:	n/a
50	chr6:150259930-150259980	PFSK-1	brain:	n/a

(count:6 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr6:150258514..150260378-chr6:150337573..150339969,2	MCF-7	breast:
2	chr6:150255655..150257664-chr6:150259479..150262477,4	K562	blood:
3	chr6:149846576..149848106-chr6:150258402..150260712,2	K562	blood:
4	chr6:150255165..150257260-chr6:150258635..150261924,3	MCF-7	breast:
5	chr6:150257396..150260080-chr6:150261360..150264274,3	MCF-7	breast:
6	chr6:150254783..150257862-chr6:150259479..150262603,4	K562	blood:

No data

Variant related genes	Relation type
ULBP2	TF binding region
ULBP2	CpG island
ENSG00000216621	Chromatin interaction
ENSG00000131015	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10499261	0.84[AMR][1000 genomes]
rs12523670	0.81[AMR][1000 genomes]
rs12662588	0.83[AMR][1000 genomes]
rs12664934	0.81[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17079064	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17079076	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17079081	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17079083	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17079087	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17079117	0.81[AFR][1000 genomes];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17079127	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs17079130	0.86[AMR][1000 genomes]
rs4084448	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4133317	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4273697	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4283897	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4354166	0.91[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs4473866	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4504486	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4591860	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57923090	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59712181	0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs60324886	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs61233579	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs6557194	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7740713	0.86[AMR][1000 genomes]
rs7744918	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7760608	0.84[AMR][1000 genomes]
rs7764321	0.91[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7767362	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9791229	0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3332714	chr6:150259037-150275045	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150259400-150260000	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr6:150259400-150260000	Flanking Active TSS	Right Atrium	heart
3	chr6:150259400-150260000	Flanking Bivalent TSS/Enh	HSMM	muscle
4	chr6:150259400-150260000	Bivalent/Poised TSS	HSMMtube	muscle
5	chr6:150259400-150260200	Flanking Bivalent TSS/Enh	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr6:150259400-150260200	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
7	chr6:150259400-150260200	Bivalent/Poised TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr6:150259400-150260200	Bivalent/Poised TSS	Muscle Satellite Cultured Cells	--
9	chr6:150259400-150260200	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
10	chr6:150259400-150260200	Flanking Bivalent TSS/Enh	Fetal Adrenal Gland	Adrenal Gland
11	chr6:150259400-150260200	Flanking Bivalent TSS/Enh	Placenta	Placenta
12	chr6:150259400-150260200	Active TSS	Hela-S3	cervix
13	chr6:150259400-150260200	Flanking Active TSS	HMEC	breast
14	chr6:150259400-150260400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
15	chr6:150259400-150260400	Bivalent/Poised TSS	H9 Cell Line	embryonic stem cell
16	chr6:150259400-150260400	Bivalent/Poised TSS	iPS-18 Cell Line	embryonic stem cell
17	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Breast Myoepithelial Primary Cells	Breast
19	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Primary T cells fromperipheralblood	blood
20	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Primary T helper naive cells fromperipheralblood	blood
21	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Primary T helper cells fromperipheralblood	blood
22	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Primary T regulatory cells fromperipheralblood	blood
23	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Primary T cells effector/memory enriched fromperipheralblood	blood
24	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
29	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Duodenum Mucosa	Duodenum
30	chr6:150259400-150260400	Bivalent Enhancer	Fetal Heart	heart
31	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Psoas Muscle	Psoas
32	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
33	chr6:150259400-150260400	Enhancers	Spleen	Spleen
34	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	HepG2	liver
35	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
36	chr6:150259400-150260400	Flanking Bivalent TSS/Enh	Osteobl	bone
37	chr6:150259400-150260600	Flanking Bivalent TSS/Enh	Primary T helper cells PMA-I stimulated	--
38	chr6:150259400-150260600	Flanking Bivalent TSS/Enh	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr6:150259400-150260800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
40	chr6:150259400-150260800	Flanking Bivalent TSS/Enh	Primary T helper 17 cells PMA-I stimulated	--
41	chr6:150259400-150260800	Bivalent Enhancer	Fetal Lung	lung
42	chr6:150259600-150260000	Bivalent/Poised TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr6:150259600-150260000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
44	chr6:150259600-150260000	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
45	chr6:150259600-150260000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
46	chr6:150259600-150260000	Flanking Bivalent TSS/Enh	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr6:150259600-150260000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells	blood
48	chr6:150259600-150260000	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells short term culture	blood
49	chr6:150259600-150260000	Flanking Bivalent TSS/Enh	Duodenum Smooth Muscle	Duodenum
50	chr6:150259600-150260000	Flanking Active TSS	Gastric	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links