Variant report

Variant	rs17079081
Chromosome Location	chr6:150263083-150263084
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:143)
CpG islands
(count:122)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:143 , 50 per page) page: 1 2 3

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SUZ12	chr6:150262966-150263983	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr6:150262800-150263494	HUVEC	blood vessel:	n/a	n/a
3	JUND	chr6:150262979-150263292	A549	lung:	n/a	n/a
4	YY1	chr6:150263041-150263264	GM12878	blood:	n/a	n/a
5	FOS	chr6:150262879-150263323	MCF10A-Er-Src	breast:	n/a	chr6:150263145-150263156
6	POLR2A	chr6:150262737-150263565	HUVEC	blood vessel:	n/a	n/a
7	FOXP2	chr6:150262905-150263194	SK-N-MC	brain:	n/a	n/a
8	ZNF143	chr6:150262878-150263167	GM12878	blood:	n/a	n/a
9	SP4	chr6:150262705-150263098	H1-hESC	embryonic stem cell:	n/a	n/a
10	MYC	chr6:150262634-150263201	K562	blood:	n/a	n/a
11	CTCF	chr6:150263062-150263125	GM12878	blood:	n/a	n/a
12	MAX	chr6:150262581-150263361	MCF-7	breast:	n/a	n/a
13	MAX	chr6:150262679-150263437	A549	lung:	n/a	n/a
14	POLR2A	chr6:150262774-150263521	MCF-7	breast:	n/a	n/a
15	FOS	chr6:150262929-150263324	MCF10A-Er-Src	breast:	n/a	chr6:150263145-150263156
16	MXI1	chr6:150262484-150263566	SK-N-SH	brain:	n/a	n/a
17	TAF1	chr6:150262943-150263460	H1-neurons	neurons:	n/a	n/a
18	MAX	chr6:150262573-150263523	A549	lung:	n/a	n/a
19	POLR2A	chr6:150262785-150263350	SK-N-MC	brain:	n/a	n/a
20	STAT3	chr6:150262791-150263290	MCF10A-Er-Src	breast:	n/a	chr6:150263018-150263030
21	FOS	chr6:150262853-150263563	HUVEC	blood vessel:	n/a	chr6:150263145-150263156
22	USF1	chr6:150262905-150263196	SK-N-SH_RA	brain:	n/a	n/a
23	MAX	chr6:150262614-150263299	K562	blood:	n/a	n/a
24	SP1	chr6:150262760-150263256	A549	lung:	n/a	chr6:150263018-150263032 chr6:150262808-150262822
25	E2F6	chr6:150262665-150263318	A549	lung:	n/a	chr6:150263107-150263116 chr6:150263043-150263052 chr6:150263097-150263104 chr6:150262855-150262865 chr6:150263097-150263104 chr6:150263097-150263104
26	YY1	chr6:150262981-150263463	K562	blood:	n/a	n/a
27	SIN3AK20	chr6:150262951-150263287	SK-N-SH	brain:	n/a	n/a
28	ELF1	chr6:150262887-150263563	GM12878	blood:	n/a	n/a
29	SP1	chr6:150262852-150263251	GM12878	blood:	n/a	chr6:150263018-150263032
30	HA-E2F1	chr6:150262828-150263427	MCF-7	breast:	n/a	chr6:150263107-150263116 chr6:150263043-150263052 chr6:150263097-150263104 chr6:150262855-150262865 chr6:150263097-150263104 chr6:150263097-150263104
31	STAT1	chr6:150263006-150263230	GM12878	blood:	n/a	chr6:150263018-150263030
32	USF1	chr6:150262905-150263242	SK-N-SH	brain:	n/a	n/a
33	CCNT2	chr6:150262706-150263315	K562	blood:	n/a	n/a
34	POLR2A	chr6:150262740-150263509	K562	blood:	n/a	n/a
35	CTCF	chr6:150262940-150263090	HUVEC	blood vessel:	n/a	n/a
36	USF1	chr6:150262875-150263152	SK-N-SH_RA	brain:	n/a	n/a
37	STAT3	chr6:150262695-150263303	MCF10A-Er-Src	breast:	n/a	chr6:150263018-150263030
38	MYC	chr6:150262723-150263247	K562	blood:	n/a	n/a
39	SP2	chr6:150262740-150263154	K562	blood:	n/a	n/a
40	CTBP2	chr6:150262374-150263823	H1-hESC	embryonic stem cell:	n/a	n/a
41	PBX3	chr6:150262915-150263115	GM12878	blood:	n/a	n/a
42	POLR2A	chr6:150262847-150263453	ProgFib	skin:	n/a	n/a
43	POLR2A	chr6:150262889-150263390	MCF10A-Er-Src	breast:	n/a	n/a
44	MYC	chr6:150262852-150263254	MCF10A-Er-Src	breast:	n/a	n/a
45	USF1	chr6:150262849-150263266	ECC-1	luminal epithelium:	n/a	n/a
46	CHD2	chr6:150262728-150263178	K562	blood:	n/a	n/a
47	ATF1	chr6:150262888-150263243	K562	blood:	n/a	n/a
48	PBX3	chr6:150262814-150263306	SK-N-SH	brain:	n/a	n/a
49	POLR2A	chr6:150262589-150263536	U87	brain:	n/a	n/a
50	ZBTB7A	chr6:150262925-150263665	ECC-1	luminal epithelium:	n/a	n/a

(count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:150263070-150263120	AG04450	lung:	fetal
2	chr6:150263070-150263120	RPTEC	kidney:	n/a
3	chr6:150263070-150263120	NH-A	brain:	n/a
4	chr6:150263035-150263085	MCF10A-Er-Src	breast:	n/a
5	chr6:150263070-150263120	AG09319	gingival:	n/a
6	chr6:150263070-150263120	IMR90	lung:	fetal
7	chr6:150263070-150263120	GM12878	blood:	n/a
8	chr6:150263035-150263085	RPTEC	kidney:	n/a
9	chr6:150263070-150263120	K562	blood:	n/a
10	chr6:150263035-150263085	NB4	blood:	n/a
11	chr6:150263035-150263085	AG04449	skin:	fetal
12	chr6:150263070-150263120	HRCEpiC	kidney:	n/a
13	chr6:150263035-150263085	GM06990	blood:	n/a
14	chr6:150263035-150263085	MCF-7	breast:	n/a
15	chr6:150263070-150263120	NHDF-neo	bronchial:	n/a
16	chr6:150263070-150263120	AG04449	skin:	fetal
17	chr6:150263035-150263085	SKMC	muscle:	n/a
18	chr6:150263035-150263085	HCPEpiC	choroid plexus:	n/a
19	chr6:150263070-150263120	CMK	blood:	n/a
20	chr6:150263035-150263085	ECC-1	luminal epithelium:	n/a
21	chr6:150263070-150263120	BE2_C	brain:	n/a
22	chr6:150263035-150263085	HIPEpiC	eye:	n/a
23	chr6:150263035-150263085	AG09319	gingival:	n/a
24	chr6:150263070-150263120	AG09309	skin:	n/a
25	chr6:150263070-150263120	HRE	kidney:	n/a
26	chr6:150263035-150263085	CMK	blood:	n/a
27	chr6:150263035-150263085	AoSMC	blood vessel:	n/a
28	chr6:150263035-150263085	NH-A	brain:	n/a
29	chr6:150263035-150263085	IMR90	lung:	fetal
30	chr6:150263035-150263085	HL-60	blood:	n/a
31	chr6:150263035-150263085	PFSK-1	brain:	n/a
32	chr6:150263035-150263085	Caco-2	colon:	n/a
33	chr6:150263035-150263085	PANC-1	pancreas:	n/a
34	chr6:150263035-150263085	HepG2	liver:	n/a
35	chr6:150263035-150263085	ovcar-3	ovarian:	n/a
36	chr6:150263035-150263085	HMEC	breast:	n/a
37	chr6:150263070-150263120	PANC-1	pancreas:	n/a
38	chr6:150263070-150263120	A549	lung:	n/a
39	chr6:150263070-150263120	BJ	skin:	n/a
40	chr6:150263070-150263120	SKMC	muscle:	n/a
41	chr6:150263070-150263120	NHBE	bronchial:	n/a
42	chr6:150263070-150263120	NB4	blood:	n/a
43	chr6:150263070-150263120	HRPEpiC	eye:	n/a
44	chr6:150263035-150263085	HEK293	kidney:	embryo
45	chr6:150263070-150263120	SK-N-SH_RA	brain:	n/a
46	chr6:150263070-150263120	H1-hESC	embryonic stem cell:	embryo
47	chr6:150263070-150263120	AG10803	skin:	n/a
48	chr6:150263035-150263085	HEEpiC	esophagus:	n/a
49	chr6:150263035-150263085	NHBE	bronchial:	n/a
50	chr6:150263035-150263085	AG10803	skin:	n/a

No data

Variant related genes	Relation type
ULBP2	TF binding region
ULBP2	CpG island

Extended variants
information (count: 43 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10499261	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12524576	0.81[ASN][1000 genomes]
rs12529569	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs12662588	0.81[AMR][1000 genomes]
rs12664934	0.83[AMR][1000 genomes]
rs1535955	0.90[CHB][hapmap]
rs17079064	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17079068	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17079076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079083	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079087	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17079117	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17079127	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs17079130	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs2018074	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs2343264	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs4084448	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4133317	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4273697	0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4283897	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4354166	0.89[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4425606	0.95[CHB][hapmap]
rs4473866	0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4504486	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4591860	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57923090	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59712181	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs60324886	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61233579	0.86[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs6557194	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7740713	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7744918	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs7745903	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap]
rs7760608	1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7764321	0.89[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7767362	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9791229	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	esv1817805	chr6:150209592-150268708	Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	esv3332714	chr6:150259037-150275045	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
6	nsv970174	chr6:150262064-150263659	Bivalent Enhancer Active TSS Flanking Active TSS Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17079081	ULBP2	cis	multi-tissue	Pritchard

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150261400-150264000	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
2	chr6:150261800-150263200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:150262200-150263200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:150262400-150263200	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr6:150262400-150263400	Bivalent/Poised TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr6:150262400-150263400	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
7	chr6:150262400-150263400	Active TSS	Right Ventricle	heart
8	chr6:150262400-150263400	Active TSS	HSMM	muscle
9	chr6:150262400-150263600	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
10	chr6:150262400-150263600	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
11	chr6:150262400-150263800	Bivalent/Poised TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr6:150262400-150263800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
13	chr6:150262400-150263800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:150262400-150263800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
15	chr6:150262400-150263800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr6:150262400-150263800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr6:150262400-150263800	Active TSS	Brain Angular Gyrus	brain
18	chr6:150262400-150263800	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
19	chr6:150262400-150263800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
20	chr6:150262400-150263800	Active TSS	HSMMtube	muscle
21	chr6:150262400-150264000	Bivalent/Poised TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:150262400-150264000	Bivalent/Poised TSS	Fetal Brain Female	brain
23	chr6:150262400-150264000	Active TSS	NHLF	lung
24	chr6:150262600-150263200	Bivalent/Poised TSS	ES-UCSF4 Cell Line	embryonic stem cell
25	chr6:150262600-150263200	Active TSS	Primary T helper naive cells fromperipheralblood	blood
26	chr6:150262600-150263200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:150262600-150263200	Bivalent/Poised TSS	Primary mononuclear cells fromperipheralblood	Blood
28	chr6:150262600-150263200	Active TSS	Brain Anterior Caudate	brain
29	chr6:150262600-150263200	Active TSS	Lung	lung
30	chr6:150262600-150263200	Bivalent/Poised TSS	Placenta Amnion	Placenta Amnion
31	chr6:150262600-150263200	Bivalent/Poised TSS	Psoas Muscle	Psoas
32	chr6:150262600-150263200	Active TSS	Skeletal Muscle Female	skeletal muscle
33	chr6:150262600-150263200	Bivalent/Poised TSS	Thymus	Thymus
34	chr6:150262600-150263200	Bivalent/Poised TSS	Monocytes-CD14+_RO01746	blood
35	chr6:150262600-150263400	Bivalent/Poised TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
36	chr6:150262600-150263400	Flanking Active TSS	Primary B cells from cord blood	blood
37	chr6:150262600-150263400	Active TSS	Primary T killer naive cells fromperipheralblood	blood
38	chr6:150262600-150263400	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr6:150262600-150263400	Active TSS	Pancreas	Pancrea
40	chr6:150262600-150263400	Active TSS	HUVEC	blood vessel
41	chr6:150262600-150263400	Active TSS	NHEK	skin
42	chr6:150262600-150263600	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
43	chr6:150262600-150263600	Bivalent/Poised TSS	H1 Cell Line	embryonic stem cell
44	chr6:150262600-150263600	Flanking Bivalent TSS/Enh	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:150262600-150263600	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
46	chr6:150262600-150263600	Flanking Bivalent TSS/Enh	Primary monocytes fromperipheralblood	blood
47	chr6:150262600-150263600	Flanking Bivalent TSS/Enh	Primary B cells from peripheral blood	blood
48	chr6:150262600-150263600	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr6:150262600-150263600	Flanking Bivalent TSS/Enh	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr6:150262600-150263600	Bivalent/Poised TSS	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links