Variant report

Variant	rs4084448
Chromosome Location	chr6:150280094-150280095
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10499261	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12110592	0.90[ASN][1000 genomes]
rs12523670	0.89[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12525053	0.84[ASN][1000 genomes]
rs12527074	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12529569	0.90[ASN][1000 genomes]
rs12530097	0.87[ASN][1000 genomes]
rs12662588	0.92[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12663861	0.88[ASN][1000 genomes]
rs12664934	0.83[AFR][1000 genomes]
rs1577353	0.88[ASN][1000 genomes]
rs17079064	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17079068	0.86[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs17079076	0.86[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17079081	0.84[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17079083	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17079087	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs17079117	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17079127	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17079130	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1977656	0.84[ASN][1000 genomes]
rs2018074	0.90[ASN][1000 genomes]
rs2181918	0.87[ASN][1000 genomes]
rs2343264	0.90[ASN][1000 genomes]
rs3860818	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4133317	0.81[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs4354166	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4425606	0.93[ASN][1000 genomes]
rs4504486	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs56370653	0.88[ASN][1000 genomes]
rs56887763	0.81[EUR][1000 genomes]
rs57923090	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs59712181	0.87[AFR][1000 genomes]
rs60324886	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs61158421	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61233579	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61298074	0.92[ASN][1000 genomes]
rs61462794	0.81[EUR][1000 genomes]
rs62441825	0.93[ASN][1000 genomes]
rs62441832	0.87[ASN][1000 genomes]
rs62441834	0.87[ASN][1000 genomes]
rs73779712	0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73779717	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73779721	0.90[ASN][1000 genomes]
rs73779728	0.87[ASN][1000 genomes]
rs73779729	0.87[ASN][1000 genomes]
rs73779733	0.87[ASN][1000 genomes]
rs7454183	0.89[ASN][1000 genomes]
rs7740713	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7744918	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7745903	0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7749024	0.90[ASN][1000 genomes]
rs7760608	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7763485	0.89[ASN][1000 genomes]
rs7763772	0.90[ASN][1000 genomes]
rs7764321	0.84[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs7767362	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9791229	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv886764	chr6:150114745-150393683	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv517022	chr6:150145001-150426272	Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Strong transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	nsv886765	chr6:150198491-150288722	Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
4	nsv981194	chr6:150276068-150281801	Bivalent Enhancer Bivalent/Poised TSS Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150279000-150280200	Enhancers	HUVEC	blood vessel

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links