Variant report

Variant	rs12664711
Chromosome Location	chr6:134359020-134359021
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134353923..134355591-chr6:134358925..134360738,2	K562	blood:
2	chr6:134349888..134351478-chr6:134356973..134359120,2	MCF-7	breast:
3	chr6:134336380..134337895-chr6:134357599..134359145,2	MCF-7	breast:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6911375	1.00[CEU][hapmap]
rs73774199	0.94[ASN][1000 genomes]
rs7767123	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7767456	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs7767742	0.94[ASN][1000 genomes]
rs9885805	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134328600-134361600	Weak transcription	Esophagus	oesophagus
2	chr6:134342000-134361600	Weak transcription	Gastric	stomach
3	chr6:134346400-134368800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr6:134348600-134362400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr6:134350200-134369000	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr6:134350600-134362200	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr6:134350600-134370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr6:134351600-134372400	Weak transcription	Right Ventricle	heart
9	chr6:134353400-134362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr6:134354600-134359200	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr6:134356600-134362400	Weak transcription	Psoas Muscle	Psoas
12	chr6:134357000-134369000	Weak transcription	Aorta	Aorta
13	chr6:134357200-134362000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr6:134357200-134362400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:134357200-134362400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr6:134357200-134362400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr6:134357200-134362400	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr6:134357200-134362400	Weak transcription	K562	blood
19	chr6:134357200-134365400	Weak transcription	Lung	lung
20	chr6:134357200-134368800	Weak transcription	Left Ventricle	heart
21	chr6:134357600-134360800	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:134357600-134361400	Weak transcription	Primary monocytes fromperipheralblood	blood
23	chr6:134357600-134361600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr6:134357600-134361600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr6:134357600-134362000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr6:134357600-134362000	Weak transcription	Osteobl	bone
27	chr6:134357600-134362200	Weak transcription	NH-A	brain
28	chr6:134357600-134362400	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr6:134357800-134361600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr6:134357800-134361600	Weak transcription	HMEC	breast
31	chr6:134357800-134362000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr6:134357800-134362000	Weak transcription	NHEK	skin
33	chr6:134357800-134366000	Weak transcription	Brain Anterior Caudate	brain
34	chr6:134357800-134368600	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr6:134357800-134368800	Weak transcription	Brain Cingulate Gyrus	brain
36	chr6:134358000-134362000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:134358800-134359400	Enhancers	HepG2	liver
38	chr6:134359000-134359200	Enhancers	Duodenum Mucosa	Duodenum
39	chr6:134359000-134359200	Enhancers	Fetal Intestine Small	intestine
40	chr6:134359000-134359200	Enhancers	Right Atrium	heart
41	chr6:134359000-134359200	Enhancers	Stomach Mucosa	stomach
42	chr6:134359000-134359400	Enhancers	Fetal Intestine Large	intestine

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