Variant report

Variant	rs9885805
Chromosome Location	chr6:134362274-134362275
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:134355652..134357215-chr6:134361565..134364070,2	K562	blood:
2	chr6:134362111..134364725-chr6:134368474..134372362,3	K562	blood:
3	chr6:134362030..134364186-chr6:134382793..134384405,2	MCF-7	breast:
4	chr6:134360758..134363331-chr6:134372842..134375718,2	K562	blood:
5	chr6:134336827..134339665-chr6:134361566..134364171,2	K562	blood:
6	chr6:134355846..134358817-chr6:134361832..134364274,2	K562	blood:

Variant related genes	Relation type
ENSG00000146411	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12664711	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs73774199	0.94[ASN][1000 genomes]
rs7767123	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7767456	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7767742	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134346400-134368800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr6:134348600-134362400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:134350200-134369000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr6:134350600-134370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr6:134351600-134372400	Weak transcription	Right Ventricle	heart
6	chr6:134353400-134362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr6:134356600-134362400	Weak transcription	Psoas Muscle	Psoas
8	chr6:134357000-134369000	Weak transcription	Aorta	Aorta
9	chr6:134357200-134362400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:134357200-134362400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr6:134357200-134362400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:134357200-134362400	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr6:134357200-134362400	Weak transcription	K562	blood
14	chr6:134357200-134365400	Weak transcription	Lung	lung
15	chr6:134357200-134368800	Weak transcription	Left Ventricle	heart
16	chr6:134357600-134362400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr6:134357800-134366000	Weak transcription	Brain Anterior Caudate	brain
18	chr6:134357800-134368600	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:134357800-134368800	Weak transcription	Brain Cingulate Gyrus	brain
20	chr6:134359200-134365000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
21	chr6:134361000-134370000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr6:134361400-134363200	Enhancers	Primary monocytes fromperipheralblood	blood
23	chr6:134361600-134362600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr6:134361600-134362800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr6:134361600-134363000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:134361600-134363000	Enhancers	HMEC	breast
27	chr6:134361600-134363200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr6:134361800-134362400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr6:134361800-134362800	Enhancers	HSMMtube	muscle
30	chr6:134361800-134363000	Enhancers	Hela-S3	cervix
31	chr6:134362000-134362800	Enhancers	HSMM	muscle
32	chr6:134362000-134362800	Enhancers	Osteobl	bone
33	chr6:134362000-134363000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:134362000-134363000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr6:134362000-134363000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr6:134362000-134363000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr6:134362000-134363000	Enhancers	NHEK	skin
38	chr6:134362200-134362600	Enhancers	NHDF-Ad	bronchial
39	chr6:134362200-134362800	Enhancers	NH-A	brain
40	chr6:134362200-134363000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr6:134362200-134363000	Enhancers	HUES48 Cell Line	embryonic stem cell
42	chr6:134362200-134363000	Enhancers	iPS-18 Cell Line	embryonic stem cell
43	chr6:134362200-134363000	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr6:134362200-134363200	Enhancers	Monocytes-CD14+_RO01746	blood

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