Variant report

Variant	rs7767123
Chromosome Location	chr6:134355943-134355944
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134355652..134357215-chr6:134361565..134364070,2	K562	blood:
2	chr6:134355846..134358817-chr6:134361832..134364274,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12664711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73774199	1.00[ASN][1000 genomes]
rs7767456	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885805	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134318000-134356400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:134328600-134361600	Weak transcription	Esophagus	oesophagus
3	chr6:134339200-134356000	Weak transcription	Fetal Muscle Leg	muscle
4	chr6:134342000-134361600	Weak transcription	Gastric	stomach
5	chr6:134346400-134368800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr6:134348000-134357600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr6:134348200-134356800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr6:134348400-134356000	Weak transcription	Psoas Muscle	Psoas
9	chr6:134348600-134356400	Weak transcription	HUES64 Cell Line	embryonic stem cell
10	chr6:134348600-134356400	Weak transcription	Duodenum Mucosa	Duodenum
11	chr6:134348600-134356800	Weak transcription	Fetal Intestine Small	intestine
12	chr6:134348600-134362400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
13	chr6:134350000-134356000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr6:134350200-134369000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:134350600-134356400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
16	chr6:134350600-134362200	Weak transcription	Skeletal Muscle Male	skeletal muscle
17	chr6:134350600-134370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr6:134350800-134356000	Weak transcription	Aorta	Aorta
19	chr6:134350800-134356600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr6:134350800-134356800	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr6:134351600-134356000	Weak transcription	Brain Angular Gyrus	brain
22	chr6:134351600-134356000	Weak transcription	Brain Substantia Nigra	brain
23	chr6:134351600-134356200	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr6:134351600-134356200	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr6:134351600-134356400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr6:134351600-134356400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr6:134351600-134356400	Weak transcription	Monocytes-CD14+_RO01746	blood
28	chr6:134351600-134356400	Weak transcription	NHLF	lung
29	chr6:134351600-134356600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr6:134351600-134356600	Weak transcription	NHDF-Ad	bronchial
31	chr6:134351600-134356800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr6:134351600-134356800	Weak transcription	Left Ventricle	heart
33	chr6:134351600-134372400	Weak transcription	Right Ventricle	heart
34	chr6:134353200-134356400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr6:134353200-134356400	Weak transcription	Muscle Satellite Cultured Cells	--
36	chr6:134353200-134356400	Weak transcription	A549	lung
37	chr6:134353400-134356000	Weak transcription	NHEK	skin
38	chr6:134353400-134356800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr6:134353400-134362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:134353800-134356400	Weak transcription	NH-A	brain
41	chr6:134354200-134357800	Enhancers	Fetal Lung	lung
42	chr6:134354600-134356000	Enhancers	Pancreas	Pancrea
43	chr6:134354600-134359200	Enhancers	Breast Myoepithelial Primary Cells	Breast
44	chr6:134354800-134357200	Enhancers	K562	blood
45	chr6:134355600-134356800	Enhancers	Brain Hippocampus Middle	brain
46	chr6:134355600-134357800	Enhancers	Fetal Heart	heart
47	chr6:134355600-134357800	Enhancers	HMEC	breast
48	chr6:134355800-134356000	Enhancers	Fetal Thymus	thymus
49	chr6:134355800-134356800	Enhancers	Brain Cingulate Gyrus	brain
50	chr6:134355800-134357200	Enhancers	Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links