Variant report

Variant	rs7767456
Chromosome Location	chr6:134356120-134356121
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:134355652..134357215-chr6:134361565..134364070,2	K562	blood:
2	chr6:134355846..134358817-chr6:134361832..134364274,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 7 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12664711	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs73774199	1.00[ASN][1000 genomes]
rs7767123	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7767742	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9885805	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34122	chr6:134089019-134378252	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

mRNA abundance (count:7)

SNP	Gene	Cis/trans	Tissue	Source
rs7767456	ZNF331	trans	brain	seeQTL
rs7767456	EGR4	trans	brain	seeQTL
rs7767456	CCL4	trans	brain	seeQTL
rs7767456	FOSB	trans	brain	seeQTL
rs7767456	EGR2	trans	brain	seeQTL
rs7767456	PTGS2	trans	brain	seeQTL
rs7767456	GADD45G	trans	brain	seeQTL

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:134318000-134356400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr6:134328600-134361600	Weak transcription	Esophagus	oesophagus
3	chr6:134342000-134361600	Weak transcription	Gastric	stomach
4	chr6:134346400-134368800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:134348000-134357600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr6:134348200-134356800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr6:134348600-134356400	Weak transcription	HUES64 Cell Line	embryonic stem cell
8	chr6:134348600-134356400	Weak transcription	Duodenum Mucosa	Duodenum
9	chr6:134348600-134356800	Weak transcription	Fetal Intestine Small	intestine
10	chr6:134348600-134362400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr6:134350200-134369000	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr6:134350600-134356400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:134350600-134362200	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr6:134350600-134370200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr6:134350800-134356600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr6:134350800-134356800	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr6:134351600-134356200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr6:134351600-134356200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr6:134351600-134356400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr6:134351600-134356400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr6:134351600-134356400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr6:134351600-134356400	Weak transcription	NHLF	lung
23	chr6:134351600-134356600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr6:134351600-134356600	Weak transcription	NHDF-Ad	bronchial
25	chr6:134351600-134356800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr6:134351600-134356800	Weak transcription	Left Ventricle	heart
27	chr6:134351600-134372400	Weak transcription	Right Ventricle	heart
28	chr6:134353200-134356400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
29	chr6:134353200-134356400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr6:134353200-134356400	Weak transcription	A549	lung
31	chr6:134353400-134356800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr6:134353400-134362600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr6:134353800-134356400	Weak transcription	NH-A	brain
34	chr6:134354200-134357800	Enhancers	Fetal Lung	lung
35	chr6:134354600-134359200	Enhancers	Breast Myoepithelial Primary Cells	Breast
36	chr6:134354800-134357200	Enhancers	K562	blood
37	chr6:134355600-134356800	Enhancers	Brain Hippocampus Middle	brain
38	chr6:134355600-134357800	Enhancers	Fetal Heart	heart
39	chr6:134355600-134357800	Enhancers	HMEC	breast
40	chr6:134355800-134356800	Enhancers	Brain Cingulate Gyrus	brain
41	chr6:134355800-134357200	Enhancers	Lung	lung
42	chr6:134355800-134357800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr6:134355800-134357800	Enhancers	Brain Anterior Caudate	brain
44	chr6:134355800-134357800	Enhancers	Right Atrium	heart
45	chr6:134355800-134357800	Enhancers	Stomach Mucosa	stomach
46	chr6:134355800-134358000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr6:134355800-134359000	Enhancers	Rectal Mucosa Donor 31	rectum
48	chr6:134356000-134356600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
49	chr6:134356000-134356600	Weak transcription	Fetal Thymus	thymus
50	chr6:134356000-134356600	Enhancers	Psoas Muscle	Psoas

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