Variant report

Variant	rs12670127
Chromosome Location	chr7:11569786-11569787
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1029468	0.95[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1034740	0.85[CEU][hapmap];0.85[YRI][hapmap];0.83[AMR][1000 genomes]
rs12666303	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12666325	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12673692	0.95[CHB][hapmap];0.95[JPT][hapmap];0.89[YRI][hapmap];0.96[ASN][1000 genomes]
rs12674351	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1548503	0.83[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs1548504	0.90[CEU][hapmap];0.95[CHB][hapmap];0.82[JPT][hapmap];0.86[YRI][hapmap];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17149872	0.83[YRI][hapmap]
rs2074604	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2354962	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs29	0.80[YRI][hapmap]
rs58824165	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs58924073	0.80[AMR][1000 genomes]
rs59609056	0.81[AFR][1000 genomes];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6962022	0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6964213	0.85[CEU][hapmap]
rs6970731	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6979125	0.84[CHB][hapmap];0.89[YRI][hapmap];0.87[EUR][1000 genomes]
rs73052413	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73677745	0.82[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs739757	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7784729	0.86[CEU][hapmap];0.86[YRI][hapmap];0.83[AMR][1000 genomes]
rs7808317	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9638673	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830903	chr7:11384957-11586376	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv1028614	chr7:11511684-11596934	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv1020765	chr7:11522119-11573756	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv464366	chr7:11522525-11602899	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	nsv606200	chr7:11522525-11602899	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	nsv967452	chr7:11535987-11571414	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv887609	chr7:11547284-11581121	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2762651	chr7:11548082-11572088	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	nsv887610	chr7:11548082-11581121	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11555600-11577800	Weak transcription	Fetal Lung	lung
2	chr7:11564000-11578800	Weak transcription	Ovary	ovary
3	chr7:11564800-11582200	Weak transcription	A549	lung
4	chr7:11565000-11582200	Weak transcription	Fetal Kidney	kidney
5	chr7:11566600-11569800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:11569400-11569800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr7:11569400-11569800	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr7:11569400-11569800	Enhancers	iPS-18 Cell Line	embryonic stem cell
9	chr7:11569600-11569800	Enhancers	iPS-20b Cell Line	embryonic stem cell
10	chr7:11569600-11570000	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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