Variant report

Variant	rs6962022
Chromosome Location	chr7:11582043-11582044
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10243109	0.89[CHB][hapmap]
rs1034740	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[YRI][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12666303	1.00[CEU][hapmap];0.93[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12666325	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12670127	0.91[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12674351	0.90[CEU][hapmap];0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1548504	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17149872	0.95[JPT][hapmap];0.86[YRI][hapmap]
rs17164813	0.88[CHB][hapmap]
rs17164819	0.88[CHB][hapmap]
rs2074604	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2354962	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56074516	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58824165	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58924073	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs59609056	0.80[AMR][1000 genomes]
rs60842892	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6970731	0.98[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs6979125	0.84[JPT][hapmap];0.92[YRI][hapmap];0.84[EUR][1000 genomes]
rs73052413	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs739757	1.00[CEU][hapmap];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7778918	0.81[YRI][hapmap]
rs7784729	0.95[CEU][hapmap];0.90[YRI][hapmap];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7808317	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9638673	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv830903	chr7:11384957-11586376	Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
7	nsv1028614	chr7:11511684-11596934	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv464366	chr7:11522525-11602899	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv606200	chr7:11522525-11602899	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11564800-11582200	Weak transcription	A549	lung
2	chr7:11565000-11582200	Weak transcription	Fetal Kidney	kidney
3	chr7:11570400-11592000	Weak transcription	Fetal Brain Male	brain
4	chr7:11577400-11615200	Weak transcription	Placenta	Placenta
5	chr7:11580200-11582600	Weak transcription	Liver	Liver
6	chr7:11580200-11583000	Weak transcription	Adipose Nuclei	Adipose
7	chr7:11581000-11582400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr7:11581000-11582800	Strong transcription	Cortex derived primary cultured neurospheres	brain
9	chr7:11581000-11582800	Strong transcription	Fetal Lung	lung
10	chr7:11581200-11582200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:11581400-11582200	Weak transcription	Primary hematopoietic stem cells	blood
12	chr7:11581600-11583000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr7:11582000-11582400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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