Variant report

Variant	rs58924073
Chromosome Location	chr7:11609548-11609549
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10243109	0.85[ASN][1000 genomes]
rs1034740	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10486152	0.91[ASN][1000 genomes]
rs11766195	0.85[ASN][1000 genomes]
rs11769538	0.82[AFR][1000 genomes]
rs12666303	0.83[AMR][1000 genomes]
rs12666325	0.80[AMR][1000 genomes]
rs12670127	0.80[AMR][1000 genomes]
rs12674351	0.80[AMR][1000 genomes]
rs1548504	0.80[AMR][1000 genomes]
rs17149872	0.83[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs17164819	0.82[ASN][1000 genomes]
rs2074604	0.88[AMR][1000 genomes]
rs2354962	0.88[AMR][1000 genomes]
rs56074516	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56094756	0.84[ASN][1000 genomes]
rs56400537	0.81[AFR][1000 genomes]
rs58824165	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs59605847	0.85[AFR][1000 genomes]
rs60842892	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs61	0.81[AFR][1000 genomes]
rs64	0.80[AFR][1000 genomes]
rs6962022	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6970731	0.88[AMR][1000 genomes]
rs6979815	0.80[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs73052413	0.90[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73057902	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs739757	0.80[AMR][1000 genomes]
rs7778918	0.86[AFR][1000 genomes]
rs7784729	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7785106	0.89[ASN][1000 genomes]
rs7789441	0.85[ASN][1000 genomes]
rs7808317	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs9638673	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11577400-11615200	Weak transcription	Placenta	Placenta
2	chr7:11606200-11609800	Weak transcription	A549	lung
3	chr7:11609200-11613400	Enhancers	Liver	Liver
4	chr7:11609400-11609800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived

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