Variant report

Variant	rs7808317
Chromosome Location	chr7:11589966-11589967
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10243109	0.88[CHB][hapmap]
rs1029468	0.81[EUR][1000 genomes]
rs1034740	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[GIH][hapmap];0.81[JPT][hapmap];0.97[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];0.88[TSI][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11769538	0.89[YRI][hapmap]
rs12666303	0.90[CEU][hapmap];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12666325	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12670127	1.00[CEU][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12674351	1.00[CEU][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.81[YRI][hapmap];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs1548504	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17149872	1.00[YRI][hapmap];0.87[AFR][1000 genomes]
rs17164813	0.88[CHB][hapmap];0.86[CHD][hapmap];0.88[YRI][hapmap]
rs17164819	0.88[CHB][hapmap];0.89[CHD][hapmap]
rs2074604	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2354962	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs29	0.82[YRI][hapmap]
rs56074516	0.86[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs58824165	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs58924073	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes]
rs59609056	0.82[AMR][1000 genomes]
rs60842892	0.90[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs64	0.85[YRI][hapmap]
rs6962022	0.90[CEU][hapmap];1.00[CHB][hapmap];0.81[JPT][hapmap];0.89[YRI][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6964213	0.84[CEU][hapmap]
rs6970731	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6979125	0.85[ASW][hapmap];0.85[GIH][hapmap];0.93[MEX][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap];0.85[YRI][hapmap];0.88[EUR][1000 genomes]
rs6979815	0.86[AFR][1000 genomes]
rs73052413	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73057902	0.89[AFR][1000 genomes]
rs739757	0.90[CEU][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7778918	0.86[ASW][hapmap];0.83[CHD][hapmap];0.92[YRI][hapmap];0.81[AFR][1000 genomes]
rs7784729	0.85[CEU][hapmap];0.96[YRI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9638673	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
6	nsv1028614	chr7:11511684-11596934	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv464366	chr7:11522525-11602899	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
8	nsv606200	chr7:11522525-11602899	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	esv1793156	chr7:11584813-11595992	Weak transcription Enhancers Active TSS ZNF genes & repeats	TF binding region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:11570400-11592000	Weak transcription	Fetal Brain Male	brain
2	chr7:11577400-11615200	Weak transcription	Placenta	Placenta
3	chr7:11582800-11595000	Weak transcription	Fetal Kidney	kidney
4	chr7:11582800-11598600	Weak transcription	Fetal Lung	lung
5	chr7:11586000-11590400	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr7:11586200-11592200	Weak transcription	Primary hematopoietic stem cells	blood

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