Variant report

Variant	rs17164813
Chromosome Location	chr7:11616500-11616501
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10243109	1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs1034740	0.88[CHB][hapmap];0.94[CHD][hapmap];0.84[YRI][hapmap]
rs10486152	0.91[CEU][hapmap];0.85[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11766195	0.84[AFR][1000 genomes];0.85[EUR][1000 genomes]
rs11769538	0.89[GIH][hapmap];0.85[JPT][hapmap];0.84[LWK][hapmap];0.85[YRI][hapmap];0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11977973	0.94[JPT][hapmap]
rs12673692	0.91[CEU][hapmap];0.86[MEX][hapmap]
rs17149872	0.87[CEU][hapmap];0.88[YRI][hapmap];0.83[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs17164819	1.00[CHB][hapmap];0.97[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2189638	0.84[GIH][hapmap];0.95[JPT][hapmap];1.00[MEX][hapmap];0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs2189639	0.91[CEU][hapmap];0.95[JPT][hapmap];0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs56074516	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs56094756	0.91[ASN][1000 genomes]
rs56400537	0.85[AFR][1000 genomes]
rs58924073	0.85[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs59605847	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60842892	0.80[AFR][1000 genomes]
rs61	0.85[AFR][1000 genomes]
rs64	0.89[YRI][hapmap];0.84[AFR][1000 genomes]
rs6949833	0.85[JPT][hapmap]
rs6962022	0.88[CHB][hapmap]
rs6979125	0.85[MEX][hapmap]
rs6979815	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs73057902	0.81[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs7778918	0.84[CHB][hapmap];0.86[CHD][hapmap];0.89[GIH][hapmap];0.95[JPT][hapmap];0.89[LWK][hapmap];0.80[MKK][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7779528	0.91[GIH][hapmap];0.85[JPT][hapmap];0.82[LWK][hapmap];0.81[EUR][1000 genomes]
rs7784729	0.90[JPT][hapmap];0.84[YRI][hapmap];0.81[AFR][1000 genomes]
rs7785106	0.83[ASN][1000 genomes]
rs7789441	0.94[ASN][1000 genomes]
rs7808317	0.88[CHB][hapmap];0.86[CHD][hapmap];0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028326	chr7:11221209-11754436	Enhancers Strong transcription Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538733	chr7:11221209-11754436	Weak transcription Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1023665	chr7:11457493-11773517	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv887606	chr7:11473561-11771288	Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv606199	chr7:11506143-12486659	Active TSS Enhancers Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
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