Variant report

Variant	rs12676605
Chromosome Location	chr8:59892486-59892487
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10087479	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10283344	0.82[JPT][hapmap]
rs10957073	0.88[ASN][1000 genomes]
rs11777927	0.83[JPT][hapmap]
rs12547041	0.81[YRI][hapmap]
rs12681173	0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1463140	0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.80[AFR][1000 genomes];0.80[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs16924364	0.90[YRI][hapmap]
rs2326251	0.80[ASN][1000 genomes]
rs310362	0.92[CEU][hapmap];0.86[CHB][hapmap];0.85[EUR][1000 genomes]
rs310363	0.85[EUR][1000 genomes]
rs310365	0.86[EUR][1000 genomes]
rs310366	0.87[CHB][hapmap];0.86[EUR][1000 genomes]
rs369158	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs380013	0.88[CEU][hapmap];0.86[CHB][hapmap];0.86[JPT][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs394372	0.86[CHB][hapmap]
rs397467	0.93[CEU][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs422729	0.93[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.81[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs453505	0.93[CEU][hapmap];0.81[YRI][hapmap];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4738741	0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4738742	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4738745	0.81[YRI][hapmap];0.85[AFR][1000 genomes]
rs56220064	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59695042	0.98[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6983623	0.81[YRI][hapmap]
rs7813241	0.91[CHB][hapmap];0.90[JPT][hapmap];0.87[ASN][1000 genomes]
rs7815388	0.82[CHB][hapmap]
rs7845949	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9650194	0.84[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:59887000-59895000	Weak transcription	NHDF-Ad	bronchial
3	chr8:59887600-59903600	Weak transcription	Osteobl	bone
4	chr8:59888000-59893200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:59888000-59894000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:59888000-59899400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach
8	chr8:59889000-59893800	Strong transcription	Fetal Thymus	thymus
9	chr8:59889600-59893600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
10	chr8:59889800-59899800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr8:59890200-59892800	Weak transcription	Primary T cells from cord blood	blood
13	chr8:59890400-59903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
15	chr8:59891200-59892800	Enhancers	Stomach Smooth Muscle	stomach
16	chr8:59891200-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr8:59891400-59893600	Weak transcription	Thymus	Thymus
19	chr8:59891600-59900800	Weak transcription	Primary hematopoietic stem cells	blood
20	chr8:59891600-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr8:59891800-59904200	Weak transcription	Fetal Intestine Small	intestine
22	chr8:59892000-59895200	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr8:59892400-59892600	Enhancers	Brain Germinal Matrix	brain
24	chr8:59892400-59894600	Weak transcription	Small Intestine	intestine
25	chr8:59892400-59898800	Weak transcription	Dnd41	blood

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