Variant report

Variant	rs4738742
Chromosome Location	chr8:59892097-59892098
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10087479	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10283344	0.90[CHB][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs10957073	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs11777927	0.91[CHB][hapmap];0.87[JPT][hapmap]
rs12155519	0.82[JPT][hapmap]
rs12542449	0.89[CHB][hapmap]
rs12547041	0.81[YRI][hapmap]
rs12676605	1.00[CEU][hapmap];0.87[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12681173	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1463140	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs16924364	0.90[YRI][hapmap]
rs310362	0.92[CEU][hapmap];0.82[CHB][hapmap];0.82[JPT][hapmap];0.85[EUR][1000 genomes]
rs310363	0.85[EUR][1000 genomes]
rs310365	0.86[EUR][1000 genomes]
rs310366	0.83[CHB][hapmap];0.83[JPT][hapmap];0.86[EUR][1000 genomes]
rs369158	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs380013	0.88[CEU][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs394372	0.82[CHB][hapmap]
rs397467	0.93[CEU][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs422729	0.93[CEU][hapmap];0.91[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs453505	0.93[CEU][hapmap];0.81[YRI][hapmap];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4738741	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4738745	0.81[YRI][hapmap];0.84[AFR][1000 genomes]
rs56220064	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs59695042	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6471762	0.86[CHB][hapmap]
rs6983623	0.81[YRI][hapmap]
rs7813241	0.95[JPT][hapmap];0.81[ASN][1000 genomes]
rs7815388	0.83[JPT][hapmap]
rs7845949	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9650194	0.92[ASN][1000 genomes]

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:59887000-59895000	Weak transcription	NHDF-Ad	bronchial
3	chr8:59887600-59903600	Weak transcription	Osteobl	bone
4	chr8:59888000-59893200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:59888000-59894000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:59888000-59899400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach
8	chr8:59889000-59892400	ZNF genes & repeats	Dnd41	blood
9	chr8:59889000-59893800	Strong transcription	Fetal Thymus	thymus
10	chr8:59889600-59893600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr8:59889800-59899800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:59890200-59892800	Weak transcription	Primary T cells from cord blood	blood
14	chr8:59890400-59903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:59891200-59892800	Enhancers	Stomach Smooth Muscle	stomach
17	chr8:59891200-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:59891400-59892400	Weak transcription	Brain Germinal Matrix	brain
20	chr8:59891400-59893600	Weak transcription	Thymus	Thymus
21	chr8:59891600-59900800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr8:59891600-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:59891800-59904200	Weak transcription	Fetal Intestine Small	intestine
24	chr8:59892000-59895200	Weak transcription	Duodenum Smooth Muscle	Duodenum

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