Variant report

Variant	rs4738741
Chromosome Location	chr8:59872972-59872973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10087479	0.84[AMR][1000 genomes]
rs10283344	0.90[CHB][hapmap];0.92[CHD][hapmap];0.86[JPT][hapmap];0.84[ASN][1000 genomes]
rs10957073	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11777927	0.90[CHB][hapmap];0.86[JPT][hapmap]
rs12155519	0.82[CHD][hapmap];0.82[JPT][hapmap]
rs12542449	0.88[CHB][hapmap]
rs12547041	0.84[LWK][hapmap]
rs12676605	0.86[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12681173	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375192	0.82[LWK][hapmap];0.82[YRI][hapmap]
rs1448547	0.82[LWK][hapmap];0.82[YRI][hapmap]
rs1463140	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];0.98[TSI][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16924364	0.84[LWK][hapmap];0.84[YRI][hapmap]
rs1900774	0.90[YRI][hapmap]
rs310362	0.84[ASW][hapmap];0.82[CHB][hapmap];0.80[GIH][hapmap];0.82[JPT][hapmap]
rs310366	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs380013	0.85[ASW][hapmap];0.89[GIH][hapmap];0.91[JPT][hapmap];0.85[LWK][hapmap];0.83[MEX][hapmap];0.87[MKK][hapmap]
rs394372	0.82[CHB][hapmap]
rs422729	0.91[JPT][hapmap];0.84[AMR][1000 genomes]
rs4738742	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs4738745	0.85[ASW][hapmap];0.82[CHD][hapmap];0.94[LWK][hapmap]
rs56220064	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs59695042	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs62508379	0.82[ASN][1000 genomes]
rs6471762	0.86[CHB][hapmap];0.90[CHD][hapmap];0.82[ASN][1000 genomes]
rs6983623	0.82[LWK][hapmap];0.85[YRI][hapmap]
rs7012303	0.82[LWK][hapmap]
rs7813241	0.95[JPT][hapmap]
rs7815388	0.82[JPT][hapmap]
rs7820511	0.82[ASN][1000 genomes]
rs7820888	0.82[ASN][1000 genomes]
rs7824297	0.82[ASN][1000 genomes]
rs7845949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9650194	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
2	chr8:59852000-59875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr8:59852200-59874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59852400-59875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:59867200-59878600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:59868000-59875200	Weak transcription	Thymus	Thymus
10	chr8:59868000-59880000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:59868200-59881200	Weak transcription	Primary T cells from cord blood	blood
12	chr8:59869400-59874000	Enhancers	NHDF-Ad	bronchial
13	chr8:59869800-59873800	Enhancers	Fetal Lung	lung
14	chr8:59869800-59876800	Weak transcription	Gastric	stomach
15	chr8:59870200-59886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr8:59870400-59873800	Enhancers	Brain Germinal Matrix	brain
17	chr8:59871200-59873600	Enhancers	iPS-15b Cell Line	embryonic stem cell
18	chr8:59871400-59877200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr8:59871600-59873200	Weak transcription	Fetal Heart	heart
20	chr8:59871600-59875000	Weak transcription	Dnd41	blood
21	chr8:59871600-59878000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr8:59871600-59878000	Weak transcription	HSMM	muscle
23	chr8:59871800-59878600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr8:59871800-59878600	Weak transcription	NHLF	lung
25	chr8:59872000-59873000	Enhancers	HUES48 Cell Line	embryonic stem cell
26	chr8:59872200-59873000	Active TSS	Brain Anterior Caudate	brain
27	chr8:59872400-59873600	Enhancers	Osteobl	bone
28	chr8:59872400-59878600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr8:59872400-59878600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr8:59872400-59887600	Weak transcription	Colon Smooth Muscle	Colon
31	chr8:59872600-59873000	Flanking Active TSS	Fetal Brain Female	brain
32	chr8:59872600-59873000	Enhancers	Fetal Kidney	kidney
33	chr8:59872600-59873600	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr8:59872600-59878600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
35	chr8:59872600-59880200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr8:59872600-59882400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
37	chr8:59872800-59873000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
38	chr8:59872800-59873400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
39	chr8:59872800-59874800	Enhancers	Fetal Brain Male	brain
40	chr8:59872800-59875400	Weak transcription	Fetal Thymus	thymus
41	chr8:59872800-59876200	Weak transcription	Stomach Mucosa	stomach
42	chr8:59872800-59876400	Weak transcription	Stomach Smooth Muscle	stomach
43	chr8:59872800-59877000	Weak transcription	Small Intestine	intestine
44	chr8:59872800-59878600	Weak transcription	Fetal Stomach	stomach
45	chr8:59872800-59880000	Weak transcription	Pancreas	Pancrea
46	chr8:59872800-59889200	Weak transcription	Duodenum Mucosa	Duodenum

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