Variant report

Variant	rs1900774
Chromosome Location	chr8:59860072-59860073
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs1015794	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10504269	0.81[CHB][hapmap]
rs12543935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12675191	0.86[CEU][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12681173	0.90[YRI][hapmap]
rs13280926	0.86[CHB][hapmap]
rs1375191	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1375192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1375193	0.95[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1448547	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1448549	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1463140	0.90[YRI][hapmap]
rs17233005	0.87[CHB][hapmap]
rs17299611	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1900773	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.84[YRI][hapmap];0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044643	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs2197803	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2326268	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3780001	0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4527857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4527858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737526	0.90[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4737527	0.90[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4738736	0.90[CEU][hapmap];0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4738741	0.90[YRI][hapmap]
rs4738743	0.94[JPT][hapmap]
rs55746401	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56024919	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56073120	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58180923	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415583	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs66954327	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6983623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983967	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988253	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7001367	0.86[CHB][hapmap]
rs7001614	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7002226	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7012303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72651323	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72651324	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72651329	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7812381	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7813733	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7826756	1.00[CEU][hapmap];0.80[YRI][hapmap];0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7827417	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7834158	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7842858	0.89[JPT][hapmap]
rs7845800	0.81[CHB][hapmap];0.84[JPT][hapmap]
rs9650194	0.85[AFR][1000 genomes]

No data

Chromatin state (count:49 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:59831200-59860200	Weak transcription	Gastric	stomach
3	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr8:59843800-59863600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr8:59847600-59860400	Weak transcription	Small Intestine	intestine
7	chr8:59847800-59860600	Weak transcription	H1 Cell Line	embryonic stem cell
8	chr8:59849000-59861000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr8:59850800-59860600	Weak transcription	Primary T cells fromperipheralblood	blood
10	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
11	chr8:59852000-59861400	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr8:59852000-59862600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr8:59852000-59871200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr8:59852000-59875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr8:59852200-59861200	Weak transcription	HUES48 Cell Line	embryonic stem cell
17	chr8:59852200-59861400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr8:59852200-59866800	Weak transcription	Duodenum Mucosa	Duodenum
19	chr8:59852200-59866800	Weak transcription	Thymus	Thymus
20	chr8:59852200-59871800	Weak transcription	Stomach Smooth Muscle	stomach
21	chr8:59852200-59874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr8:59852400-59875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr8:59852600-59861000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
26	chr8:59856000-59860600	Enhancers	NHDF-Ad	bronchial
27	chr8:59857600-59865800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr8:59857800-59860400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr8:59858000-59860400	Enhancers	Osteobl	bone
30	chr8:59858200-59860400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr8:59858200-59860400	Weak transcription	Fetal Heart	heart
32	chr8:59858200-59860400	Weak transcription	Fetal Stomach	stomach
33	chr8:59858200-59863200	Weak transcription	Primary T cells from cord blood	blood
34	chr8:59858200-59866800	Weak transcription	Dnd41	blood
35	chr8:59858200-59870400	Weak transcription	Brain Germinal Matrix	brain
36	chr8:59858200-59872600	Weak transcription	Fetal Kidney	kidney
37	chr8:59858400-59860200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
38	chr8:59859000-59865000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr8:59859200-59860400	Enhancers	HUVEC	blood vessel
40	chr8:59859200-59865400	Weak transcription	Fetal Lung	lung
41	chr8:59859200-59866600	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr8:59859200-59867000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
43	chr8:59859200-59870800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr8:59859400-59860200	Weak transcription	Rectal Smooth Muscle	rectum
45	chr8:59859400-59860400	Weak transcription	NHLF	lung
46	chr8:59859400-59865400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
47	chr8:59859400-59866000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr8:59859600-59860400	Weak transcription	Fetal Thymus	thymus
49	chr8:59860000-59860800	Enhancers	Colon Smooth Muscle	Colon

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