Variant report

Variant	rs56024919
Chromosome Location	chr8:59867080-59867081
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1015794	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12543935	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12675191	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1375191	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1375192	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1375193	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1448547	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1448549	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17299611	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900773	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1900774	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2197803	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2326268	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs3780001	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4527857	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4527858	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4737526	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4737527	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4738736	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55746401	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56073120	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58180923	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs66954327	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6983623	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6983967	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6988253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7001614	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7002226	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7012303	0.85[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72651323	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72651324	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72651329	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7812381	0.87[ASN][1000 genomes]
rs7813733	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7826756	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7827417	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7834158	0.86[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
3	chr8:59852000-59871200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr8:59852000-59875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
6	chr8:59852200-59871800	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:59852200-59874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr8:59852400-59875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
11	chr8:59858200-59870400	Weak transcription	Brain Germinal Matrix	brain
12	chr8:59858200-59872600	Weak transcription	Fetal Kidney	kidney
13	chr8:59859200-59870800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:59860400-59871200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr8:59861200-59870800	Weak transcription	Fetal Stomach	stomach
16	chr8:59864600-59870200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr8:59865000-59867200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr8:59865000-59871200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr8:59865200-59867200	Enhancers	NHDF-Ad	bronchial
20	chr8:59865400-59871800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr8:59866200-59869400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr8:59866200-59869400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr8:59866200-59869400	Weak transcription	Fetal Brain Male	brain
24	chr8:59866200-59869800	Weak transcription	Fetal Lung	lung
25	chr8:59866200-59871000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:59866400-59867400	Weak transcription	Small Intestine	intestine
27	chr8:59866400-59869600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr8:59866400-59869600	Weak transcription	Colon Smooth Muscle	Colon
29	chr8:59866400-59870000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr8:59866400-59871200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr8:59866600-59867200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr8:59866600-59867600	Enhancers	Pancreatic Islets	Pancreatic Islet
33	chr8:59866800-59867200	Strong transcription	Thymus	Thymus
34	chr8:59866800-59867400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr8:59866800-59867600	Strong transcription	Dnd41	blood
36	chr8:59866800-59868000	Enhancers	Duodenum Mucosa	Duodenum
37	chr8:59866800-59868200	Genic enhancers	Fetal Thymus	thymus
38	chr8:59866800-59869800	Weak transcription	Osteobl	bone
39	chr8:59866800-59870600	Weak transcription	Fetal Brain Female	brain
40	chr8:59867000-59867200	Enhancers	Pancreas	Pancrea
41	chr8:59867000-59867600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr8:59867000-59867600	Enhancers	Gastric	stomach
43	chr8:59867000-59868200	Enhancers	Primary T cells from cord blood	blood
44	chr8:59867000-59869000	Enhancers	Stomach Mucosa	stomach

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