Variant report

Variant	rs7812381
Chromosome Location	chr8:59892234-59892235
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1015794	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs12543935	0.94[CHB][hapmap];0.93[JPT][hapmap];0.82[ASN][1000 genomes]
rs1375191	0.84[ASN][1000 genomes]
rs1375192	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs1375193	0.82[CHB][hapmap];0.94[JPT][hapmap]
rs1448547	0.95[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1448549	0.87[CHB][hapmap];0.94[JPT][hapmap]
rs17299611	0.96[CHB][hapmap];0.94[JPT][hapmap];0.87[ASN][1000 genomes]
rs1900773	0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs1900774	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2197803	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs2326268	0.91[CHB][hapmap];0.94[JPT][hapmap]
rs3780001	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4527857	0.91[CHB][hapmap];0.94[JPT][hapmap];0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4527858	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs4737526	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4737527	0.86[CHB][hapmap];0.82[JPT][hapmap]
rs4738743	1.00[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55730053	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55746401	0.87[ASN][1000 genomes]
rs56024919	0.87[ASN][1000 genomes]
rs56073120	0.87[ASN][1000 genomes]
rs58180923	0.85[ASN][1000 genomes]
rs6983623	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs6983967	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs6988253	0.87[ASN][1000 genomes]
rs7001614	0.84[ASN][1000 genomes]
rs7002226	0.86[ASN][1000 genomes]
rs7012303	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs72651323	0.84[ASN][1000 genomes]
rs72651324	0.86[ASN][1000 genomes]
rs72651329	0.84[ASN][1000 genomes]
rs7813733	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7826756	0.87[ASN][1000 genomes]
rs7827417	0.84[ASN][1000 genomes]
rs7834158	0.91[CHB][hapmap];0.93[JPT][hapmap]
rs7842858	0.92[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs826597	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59873600-59893200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr8:59887000-59895000	Weak transcription	NHDF-Ad	bronchial
3	chr8:59887600-59903600	Weak transcription	Osteobl	bone
4	chr8:59888000-59893200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
5	chr8:59888000-59894000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr8:59888000-59899400	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach
8	chr8:59889000-59892400	ZNF genes & repeats	Dnd41	blood
9	chr8:59889000-59893800	Strong transcription	Fetal Thymus	thymus
10	chr8:59889600-59893600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr8:59889800-59899800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr8:59890200-59892800	Weak transcription	Primary T cells from cord blood	blood
14	chr8:59890400-59903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr8:59891200-59892800	Enhancers	Stomach Smooth Muscle	stomach
17	chr8:59891200-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
19	chr8:59891400-59892400	Weak transcription	Brain Germinal Matrix	brain
20	chr8:59891400-59893600	Weak transcription	Thymus	Thymus
21	chr8:59891600-59900800	Weak transcription	Primary hematopoietic stem cells	blood
22	chr8:59891600-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr8:59891800-59904200	Weak transcription	Fetal Intestine Small	intestine
24	chr8:59892000-59895200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr8:59892200-59892400	Enhancers	Small Intestine	intestine

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