Variant report

Variant	rs7813733
Chromosome Location	chr8:59852429-59852430
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs1015794	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10504269	0.82[CHB][hapmap]
rs12543935	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12675191	0.90[CEU][hapmap];0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13280926	0.87[CHB][hapmap]
rs1375191	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375192	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1375193	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1448547	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1448549	1.00[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17233005	0.88[CHB][hapmap]
rs17299611	0.95[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1900773	0.95[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1900774	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2044643	0.82[CHB][hapmap];0.83[JPT][hapmap]
rs2197803	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2326268	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3780001	0.90[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4527857	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4527858	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4737526	0.95[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4737527	0.95[CEU][hapmap];0.95[CHB][hapmap];0.88[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4738736	0.95[CEU][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4738743	0.94[JPT][hapmap]
rs55746401	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56024919	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56073120	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs58180923	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6415583	0.83[CHB][hapmap];0.84[JPT][hapmap]
rs66954327	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6983623	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap];0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6983967	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6988253	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7001367	0.87[CHB][hapmap]
rs7001614	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7002226	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7012303	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72651323	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs72651324	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72651329	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7812381	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[ASN][1000 genomes]
rs7826756	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7827417	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7834158	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7842858	0.89[JPT][hapmap]
rs7845800	0.82[CHB][hapmap];0.84[JPT][hapmap]

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:59831200-59860200	Weak transcription	Gastric	stomach
3	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
6	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr8:59840000-59854000	Strong transcription	Dnd41	blood
8	chr8:59841000-59858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr8:59841000-59859000	Weak transcription	Fetal Intestine Small	intestine
10	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr8:59843000-59852600	Strong transcription	Primary T cells from cord blood	blood
12	chr8:59843800-59863600	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr8:59844600-59853400	Strong transcription	Fetal Thymus	thymus
14	chr8:59847000-59857800	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr8:59847200-59856000	Weak transcription	NHDF-Ad	bronchial
16	chr8:59847400-59853000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr8:59847400-59858000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr8:59847600-59857400	Weak transcription	HUVEC	blood vessel
19	chr8:59847600-59860400	Weak transcription	Small Intestine	intestine
20	chr8:59847800-59860600	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr8:59848800-59852600	Strong transcription	Primary hematopoietic stem cells	blood
22	chr8:59849000-59858000	Weak transcription	Rectal Smooth Muscle	rectum
23	chr8:59849000-59861000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
24	chr8:59849800-59857800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr8:59850000-59858000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr8:59850400-59852600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
27	chr8:59850800-59860600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
29	chr8:59852000-59858400	Weak transcription	Colon Smooth Muscle	Colon
30	chr8:59852000-59861400	Weak transcription	HUES64 Cell Line	embryonic stem cell
31	chr8:59852000-59862600	Weak transcription	Rectal Mucosa Donor 29	rectum
32	chr8:59852000-59871200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr8:59852000-59875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
35	chr8:59852200-59854000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr8:59852200-59855400	Weak transcription	Fetal Brain Female	brain
37	chr8:59852200-59856400	Weak transcription	Fetal Stomach	stomach
38	chr8:59852200-59858000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr8:59852200-59858000	Weak transcription	Osteobl	bone
40	chr8:59852200-59861200	Weak transcription	HUES48 Cell Line	embryonic stem cell
41	chr8:59852200-59861400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
42	chr8:59852200-59866800	Weak transcription	Duodenum Mucosa	Duodenum
43	chr8:59852200-59866800	Weak transcription	Thymus	Thymus
44	chr8:59852200-59871800	Weak transcription	Stomach Smooth Muscle	stomach
45	chr8:59852200-59874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
46	chr8:59852400-59858000	Weak transcription	Cortex derived primary cultured neurospheres	brain
47	chr8:59852400-59875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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