Variant report

Variant	rs7001367
Chromosome Location	chr8:59800835-59800836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10105665	0.90[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs10109566	0.95[YRI][hapmap];0.85[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs1015794	0.91[CHB][hapmap]
rs12543935	0.89[CHB][hapmap]
rs12675191	0.84[ASN][1000 genomes]
rs13262230	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13271523	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs13280926	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1349113	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1375192	0.87[CHB][hapmap]
rs1375193	0.86[CHB][hapmap]
rs1448547	0.83[CHB][hapmap]
rs1448549	0.91[CHB][hapmap]
rs16924227	0.80[YRI][hapmap]
rs17299611	0.83[CHB][hapmap]
rs1900774	0.86[CHB][hapmap]
rs2044643	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.85[YRI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2197803	0.87[CHB][hapmap]
rs2326268	0.91[CHB][hapmap]
rs4527857	0.87[CHB][hapmap]
rs4527858	0.87[CHB][hapmap]
rs4737525	0.95[YRI][hapmap];0.90[AFR][1000 genomes];0.82[EUR][1000 genomes]
rs4737526	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs4737527	0.91[CHB][hapmap];0.80[ASN][1000 genomes]
rs4737528	0.81[YRI][hapmap]
rs6415583	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[JPT][hapmap];0.85[YRI][hapmap];0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6471756	0.89[YRI][hapmap]
rs6471757	0.95[YRI][hapmap];0.85[AFR][1000 genomes]
rs66954327	0.80[ASN][1000 genomes]
rs6983623	0.87[CHB][hapmap]
rs6983967	0.87[CHB][hapmap]
rs7000535	0.95[YRI][hapmap];0.86[AFR][1000 genomes]
rs7012303	0.86[CHB][hapmap]
rs7813733	0.87[CHB][hapmap]
rs7829715	0.95[YRI][hapmap];0.89[AFR][1000 genomes]
rs7834158	0.91[CHB][hapmap]
rs7845800	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv890938	chr8:59355053-59809785	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv890940	chr8:59785412-59809785	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
3	nsv526468	chr8:59799820-59813809	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59764200-59806400	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr8:59771400-59811000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr8:59773400-59808200	Weak transcription	Thymus	Thymus
4	chr8:59788200-59803400	Weak transcription	Gastric	stomach
5	chr8:59790600-59804000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr8:59790800-59811200	Weak transcription	Stomach Smooth Muscle	stomach
7	chr8:59791400-59811000	Weak transcription	Brain Angular Gyrus	brain
8	chr8:59794200-59820000	Weak transcription	Fetal Intestine Large	intestine
9	chr8:59794800-59804000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr8:59794800-59811000	Weak transcription	Duodenum Mucosa	Duodenum
11	chr8:59795000-59805600	Weak transcription	Colon Smooth Muscle	Colon
12	chr8:59795600-59801800	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr8:59795600-59803400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
14	chr8:59797200-59801800	Weak transcription	NHDF-Ad	bronchial
15	chr8:59798000-59801000	Strong transcription	Dnd41	blood
16	chr8:59798600-59802000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr8:59798800-59803200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr8:59799000-59801400	Weak transcription	Osteobl	bone
19	chr8:59799000-59801800	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr8:59799000-59803400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr8:59799000-59804200	Weak transcription	HSMM	muscle
22	chr8:59799000-59804600	Weak transcription	Fetal Thymus	thymus
23	chr8:59799200-59801400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
24	chr8:59799200-59801800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
25	chr8:59799400-59801600	Weak transcription	HUES48 Cell Line	embryonic stem cell
26	chr8:59799800-59801400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr8:59800200-59801400	ZNF genes & repeats	Primary T cells from cord blood	blood
28	chr8:59800600-59809800	Weak transcription	Cortex derived primary cultured neurospheres	brain
29	chr8:59800800-59801000	Weak transcription	Fetal Lung	lung
30	chr8:59800800-59801200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
31	chr8:59800800-59802000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr8:59800800-59803200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr8:59800800-59809600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr8:59800800-59810600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
35	chr8:59800800-59811000	Weak transcription	Primary hematopoietic stem cells	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links