Variant report

Variant	rs2197803
Chromosome Location	chr8:59858040-59858041
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs1015794	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10504269	0.82[CHB][hapmap]
rs12115074	0.81[CHD][hapmap]
rs12543935	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12675191	0.85[CEU][hapmap];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13280926	0.87[CHB][hapmap]
rs1375191	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1375192	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1375193	0.95[CEU][hapmap];0.91[CHB][hapmap];0.98[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1448547	1.00[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.97[TSI][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1448549	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17233005	0.87[CHB][hapmap]
rs17299611	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1900773	1.00[CEU][hapmap];0.87[CHB][hapmap];0.83[JPT][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1900774	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2044643	0.82[CHB][hapmap];0.84[CHD][hapmap];0.83[JPT][hapmap]
rs2326268	0.94[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3780001	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4527857	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4527858	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4737526	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.92[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4737527	0.90[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.88[JPT][hapmap];0.90[MEX][hapmap];0.89[TSI][hapmap];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4738736	0.90[CEU][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4738743	0.94[JPT][hapmap]
rs55746401	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56024919	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56073120	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58180923	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6415583	0.82[CHB][hapmap];0.84[JPT][hapmap]
rs66954327	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6983623	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6983967	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6988253	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7001367	0.87[CHB][hapmap]
rs7001614	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7002226	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7012303	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72651323	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72651324	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72651329	0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7812381	0.91[CHB][hapmap];0.94[JPT][hapmap];0.85[ASN][1000 genomes]
rs7813733	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7826756	1.00[CEU][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7827417	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7834158	0.95[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7842858	0.93[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap]
rs7845800	0.82[CHB][hapmap];0.86[CHD][hapmap];0.84[JPT][hapmap]

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr8:59831200-59860200	Weak transcription	Gastric	stomach
3	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
6	chr8:59841000-59859000	Weak transcription	Fetal Intestine Small	intestine
7	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr8:59843800-59863600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr8:59847600-59860400	Weak transcription	Small Intestine	intestine
10	chr8:59847800-59860600	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr8:59849000-59861000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr8:59850800-59860600	Weak transcription	Primary T cells fromperipheralblood	blood
13	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
14	chr8:59852000-59858400	Weak transcription	Colon Smooth Muscle	Colon
15	chr8:59852000-59861400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr8:59852000-59862600	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr8:59852000-59871200	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr8:59852000-59875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr8:59852200-59861200	Weak transcription	HUES48 Cell Line	embryonic stem cell
21	chr8:59852200-59861400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr8:59852200-59866800	Weak transcription	Duodenum Mucosa	Duodenum
23	chr8:59852200-59866800	Weak transcription	Thymus	Thymus
24	chr8:59852200-59871800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr8:59852200-59874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr8:59852400-59875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
28	chr8:59852600-59861000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
29	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
30	chr8:59855400-59858200	Strong transcription	Dnd41	blood
31	chr8:59855600-59859600	Strong transcription	Fetal Thymus	thymus
32	chr8:59856000-59860600	Enhancers	NHDF-Ad	bronchial
33	chr8:59856400-59858200	Enhancers	Fetal Stomach	stomach
34	chr8:59856600-59858200	Strong transcription	Primary T cells from cord blood	blood
35	chr8:59857400-59858400	Enhancers	HUVEC	blood vessel
36	chr8:59857400-59858800	Enhancers	NHEK	skin
37	chr8:59857400-59859200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr8:59857400-59859400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
39	chr8:59857600-59858200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr8:59857600-59859200	Enhancers	HMEC	breast
41	chr8:59857600-59859400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr8:59857600-59865800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr8:59857800-59858200	Enhancers	Fetal Heart	heart
44	chr8:59857800-59858800	Enhancers	Muscle Satellite Cultured Cells	--
45	chr8:59857800-59859200	Enhancers	Fetal Lung	lung
46	chr8:59857800-59859400	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr8:59857800-59859400	Enhancers	NHLF	lung
48	chr8:59857800-59860400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
49	chr8:59858000-59858200	Enhancers	Brain Germinal Matrix	brain
50	chr8:59858000-59858200	Enhancers	Fetal Kidney	kidney

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