Variant report

Variant	rs7842858
Chromosome Location	chr8:59899670-59899671
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1015794	0.89[JPT][hapmap]
rs12543935	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs1375192	0.93[CHD][hapmap];0.87[GIH][hapmap];0.89[JPT][hapmap];0.95[MEX][hapmap]
rs1375193	1.00[ASW][hapmap];0.91[CHD][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap]
rs1448547	0.88[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap]
rs1448549	0.89[JPT][hapmap]
rs17299611	0.89[JPT][hapmap]
rs178022	0.85[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1900773	0.83[JPT][hapmap]
rs1900774	0.89[JPT][hapmap]
rs2197803	0.93[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap]
rs2326268	0.89[JPT][hapmap]
rs3780001	1.00[ASW][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.83[AMR][1000 genomes]
rs4527857	0.89[JPT][hapmap];0.83[AMR][1000 genomes]
rs4527858	0.89[JPT][hapmap]
rs4737526	0.88[CHD][hapmap];0.90[MEX][hapmap]
rs4737527	0.82[ASW][hapmap];0.88[CHD][hapmap];0.90[MEX][hapmap];1.00[MKK][hapmap]
rs4738743	0.92[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55730053	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6983623	0.93[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.94[MEX][hapmap]
rs6983967	0.93[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap]
rs7012303	0.93[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.90[MEX][hapmap]
rs7812381	0.92[CEU][hapmap];0.83[CHB][hapmap];0.94[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7813733	0.89[JPT][hapmap]
rs7834158	0.86[JPT][hapmap]
rs7838155	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs826597	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7842858	RAB2A	cis	cerebellum	SCAN

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59887600-59903600	Weak transcription	Osteobl	bone
2	chr8:59888000-59903800	Weak transcription	Fetal Stomach	stomach
3	chr8:59889800-59899800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr8:59889800-59927000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr8:59890400-59903200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr8:59891000-59916600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:59891200-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
8	chr8:59891200-59918000	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:59891600-59900800	Weak transcription	Primary hematopoietic stem cells	blood
10	chr8:59891600-59903800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr8:59891800-59904200	Weak transcription	Fetal Intestine Small	intestine
12	chr8:59894800-59913600	Weak transcription	Small Intestine	intestine
13	chr8:59895800-59903200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr8:59896000-59902400	Weak transcription	Primary T cells fromperipheralblood	blood
15	chr8:59896000-59903600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr8:59896200-59903400	Weak transcription	Primary T cells from cord blood	blood
17	chr8:59896200-59903400	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr8:59896200-59903600	Weak transcription	Right Atrium	heart
19	chr8:59896400-59903400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
20	chr8:59897800-59904400	Strong transcription	Fetal Thymus	thymus
21	chr8:59898800-59900200	Strong transcription	Thymus	Thymus
22	chr8:59898800-59900200	Strong transcription	Dnd41	blood
23	chr8:59898800-59900400	Enhancers	HUES64 Cell Line	embryonic stem cell
24	chr8:59899200-59900600	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr8:59899400-59899800	Enhancers	H9 Cell Line	embryonic stem cell
26	chr8:59899400-59900000	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr8:59899400-59900400	Enhancers	H1 Cell Line	embryonic stem cell
28	chr8:59899400-59904000	Weak transcription	Colon Smooth Muscle	Colon
29	chr8:59899600-59900400	Enhancers	ES-I3 Cell Line	embryonic stem cell

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