Variant report

Variant	rs3780001
Chromosome Location	chr8:59872615-59872616
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs1015794	0.90[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12115074	0.81[CHD][hapmap]
rs12543935	0.94[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12675191	0.81[CEU][hapmap];0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1375191	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1375192	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1375193	1.00[ASW][hapmap];0.90[CEU][hapmap];0.82[CHB][hapmap];0.98[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1448547	0.95[CEU][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1448549	0.90[CEU][hapmap];0.86[CHB][hapmap];0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17299611	0.95[CEU][hapmap];0.95[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1900773	0.95[CEU][hapmap];0.89[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1900774	0.95[CEU][hapmap];0.90[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2044643	0.84[CHD][hapmap]
rs2197803	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2326268	0.90[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4527857	0.95[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4527858	0.95[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4737526	0.86[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];0.94[MEX][hapmap];0.92[TSI][hapmap];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4737527	0.82[ASW][hapmap];0.86[CEU][hapmap];0.86[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.82[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.89[TSI][hapmap];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4738736	0.86[CEU][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4738743	0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55730053	0.83[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs55746401	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56024919	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56073120	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58180923	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs66954327	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6983623	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6983967	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6988253	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7001614	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7002226	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7012303	0.95[CEU][hapmap];0.91[CHB][hapmap];1.00[CHD][hapmap];0.98[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];1.00[TSI][hapmap];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72651323	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72651324	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs72651329	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7812381	1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs7813733	0.90[CEU][hapmap];0.91[CHB][hapmap];0.94[JPT][hapmap];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7826756	0.95[CEU][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7827417	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7834158	0.90[CEU][hapmap];0.91[CHB][hapmap];0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7842858	1.00[ASW][hapmap];0.83[CHB][hapmap];0.93[CHD][hapmap];0.91[GIH][hapmap];0.94[JPT][hapmap];0.94[MEX][hapmap];1.00[MKK][hapmap];0.83[AMR][1000 genomes]
rs7845800	0.86[CHD][hapmap]
rs826597	0.83[AMR][1000 genomes]

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59851400-59878600	Weak transcription	Aorta	Aorta
2	chr8:59852000-59875200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr8:59852000-59883400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr8:59852200-59874200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr8:59852400-59875000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr8:59852400-59875600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr8:59852600-59888600	Weak transcription	Primary hematopoietic stem cells	blood
8	chr8:59867200-59878600	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr8:59868000-59875200	Weak transcription	Thymus	Thymus
10	chr8:59868000-59880000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr8:59868200-59881200	Weak transcription	Primary T cells from cord blood	blood
12	chr8:59869200-59872800	Strong transcription	Fetal Thymus	thymus
13	chr8:59869400-59874000	Enhancers	NHDF-Ad	bronchial
14	chr8:59869800-59873800	Enhancers	Fetal Lung	lung
15	chr8:59869800-59876800	Weak transcription	Gastric	stomach
16	chr8:59870200-59886600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr8:59870400-59873800	Enhancers	Brain Germinal Matrix	brain
18	chr8:59870800-59872800	Enhancers	Fetal Stomach	stomach
19	chr8:59871200-59872800	Active TSS	Pancreatic Islets	Pancreatic Islet
20	chr8:59871200-59872800	Enhancers	Stomach Mucosa	stomach
21	chr8:59871200-59873600	Enhancers	iPS-15b Cell Line	embryonic stem cell
22	chr8:59871400-59877200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr8:59871600-59873200	Weak transcription	Fetal Heart	heart
24	chr8:59871600-59875000	Weak transcription	Dnd41	blood
25	chr8:59871600-59878000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr8:59871600-59878000	Weak transcription	HSMM	muscle
27	chr8:59871800-59872800	Enhancers	Pancreas	Pancrea
28	chr8:59871800-59872800	Enhancers	Stomach Smooth Muscle	stomach
29	chr8:59871800-59878600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr8:59871800-59878600	Weak transcription	NHLF	lung
31	chr8:59872000-59872800	Enhancers	Small Intestine	intestine
32	chr8:59872000-59873000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr8:59872200-59872800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
34	chr8:59872200-59873000	Active TSS	Brain Anterior Caudate	brain
35	chr8:59872400-59872800	Flanking Active TSS	Fetal Brain Male	brain
36	chr8:59872400-59873600	Enhancers	Osteobl	bone
37	chr8:59872400-59878600	Weak transcription	Duodenum Smooth Muscle	Duodenum
38	chr8:59872400-59878600	Weak transcription	Rectal Smooth Muscle	rectum
39	chr8:59872400-59887600	Weak transcription	Colon Smooth Muscle	Colon
40	chr8:59872600-59872800	Enhancers	Duodenum Mucosa	Duodenum
41	chr8:59872600-59873000	Flanking Active TSS	Fetal Brain Female	brain
42	chr8:59872600-59873000	Enhancers	Fetal Kidney	kidney
43	chr8:59872600-59873600	Enhancers	HUES64 Cell Line	embryonic stem cell
44	chr8:59872600-59878600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
45	chr8:59872600-59880200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr8:59872600-59882400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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