Variant report

Variant	rs17233005
Chromosome Location	chr8:59851313-59851314
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

rs_ID	r²[population]
rs1015794	0.84[CHB][hapmap]
rs10504269	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12543935	0.84[CHB][hapmap]
rs1375192	0.87[CHB][hapmap]
rs1448547	0.82[CHB][hapmap]
rs1448549	0.84[CHB][hapmap]
rs17299611	0.83[CHB][hapmap]
rs1900774	0.87[CHB][hapmap]
rs2197803	0.87[CHB][hapmap]
rs2326268	0.83[CHB][hapmap]
rs4527857	0.88[CHB][hapmap]
rs4527858	0.88[CHB][hapmap]
rs4737526	0.83[CHB][hapmap]
rs4737527	0.83[CHB][hapmap]
rs6983623	0.87[CHB][hapmap]
rs6983967	0.87[CHB][hapmap]
rs7012303	0.87[CHB][hapmap]
rs7813733	0.88[CHB][hapmap]
rs7834158	0.83[CHB][hapmap]

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:59811400-59851400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr8:59817800-59867800	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr8:59831200-59860200	Weak transcription	Gastric	stomach
4	chr8:59834000-59860400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr8:59835800-59851400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr8:59837200-59858200	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr8:59839000-59860000	Weak transcription	Fetal Intestine Large	intestine
8	chr8:59839400-59851400	Weak transcription	Fetal Brain Female	brain
9	chr8:59839600-59857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr8:59840000-59854000	Strong transcription	Dnd41	blood
11	chr8:59841000-59858000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr8:59841000-59859000	Weak transcription	Fetal Intestine Small	intestine
13	chr8:59841000-59861800	Weak transcription	Rectal Mucosa Donor 31	rectum
14	chr8:59842400-59851400	Weak transcription	Duodenum Mucosa	Duodenum
15	chr8:59843000-59852600	Strong transcription	Primary T cells from cord blood	blood
16	chr8:59843800-59863600	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr8:59844600-59853400	Strong transcription	Fetal Thymus	thymus
18	chr8:59845200-59851600	Weak transcription	Colon Smooth Muscle	Colon
19	chr8:59847000-59857800	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr8:59847200-59856000	Weak transcription	NHDF-Ad	bronchial
21	chr8:59847400-59853000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr8:59847400-59858000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr8:59847600-59857400	Weak transcription	HUVEC	blood vessel
24	chr8:59847600-59860400	Weak transcription	Small Intestine	intestine
25	chr8:59847800-59860600	Weak transcription	H1 Cell Line	embryonic stem cell
26	chr8:59848200-59851800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr8:59848400-59852200	Strong transcription	Osteobl	bone
28	chr8:59848400-59852400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr8:59848800-59852200	Strong transcription	Thymus	Thymus
30	chr8:59848800-59852600	Strong transcription	Primary hematopoietic stem cells	blood
31	chr8:59849000-59852400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
32	chr8:59849000-59858000	Weak transcription	Rectal Smooth Muscle	rectum
33	chr8:59849000-59861000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
34	chr8:59849600-59852000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr8:59849800-59852200	Strong transcription	Stomach Smooth Muscle	stomach
36	chr8:59849800-59857800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
37	chr8:59850000-59852200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr8:59850000-59852400	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr8:59850000-59858000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr8:59850200-59852400	Strong transcription	Cortex derived primary cultured neurospheres	brain
41	chr8:59850400-59851800	Weak transcription	Fetal Stomach	stomach
42	chr8:59850400-59852200	Strong transcription	HUES48 Cell Line	embryonic stem cell
43	chr8:59850400-59852200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
44	chr8:59850400-59852600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
45	chr8:59850800-59852000	Strong transcription	HUES64 Cell Line	embryonic stem cell
46	chr8:59850800-59852000	Strong transcription	Rectal Mucosa Donor 29	rectum
47	chr8:59850800-59860600	Weak transcription	Primary T cells fromperipheralblood	blood
48	chr8:59851200-59852000	Strong transcription	Duodenum Smooth Muscle	Duodenum

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