Variant report

Variant	rs12692981
Chromosome Location	chr2:172992016-172992017
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:172560229..172560733-chr2:172991740..172992317,2	MCF-7	breast:
2	chr2:172430281..172430837-chr2:172991902..172992601,2	K562	blood:
3	chr2:172968260..172969180-chr2:172991674..172992572,4	MCF-7	breast:
4	chr2:172644477..172645434-chr2:172991706..172992262,2	K562	blood:
5	chr2:172562597..172563178-chr2:172991675..172992228,2	K562	blood:
6	chr2:172991741..172992311-chr2:173330334..173330913,2	MCF-7	breast:
7	chr2:172991741..172992647-chr2:173326514..173327387,2	MCF-7	breast:
8	chr2:172667461..172668379-chr2:172991701..172992562,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 13 )
Associated
traits (count: 5 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12466775	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12468831	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13009919	0.81[CEU][hapmap];1.00[GIH][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs13010989	0.81[EUR][1000 genomes]
rs13015819	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13390758	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1843757	0.85[EUR][1000 genomes]
rs2357318	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2884155	0.80[CEU][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs34158453	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35412286	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35547635	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7582678	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]

mRNA abundance (count:5)

SNP	Gene	Cis/trans	Tissue	Source
rs12692981	OLA1	cis	cerebellum	SCAN
rs12692981	G6PC2	cis	parietal	SCAN
rs12692981	TRIL	trans	parietal	SCAN
rs12692981	MAP4	trans	parietal	SCAN
rs12692981	DHRS9	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:172991400-172993400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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