Variant report

Variant	rs2357318
Chromosome Location	chr2:173003548-173003549
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10930521	0.80[EUR][1000 genomes]
rs12466775	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12468831	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12692981	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13009919	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13010989	0.84[EUR][1000 genomes]
rs13015819	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13390758	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1843757	0.87[EUR][1000 genomes]
rs2884155	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34158453	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35412286	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs35547635	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7582678	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1827284	chr2:172997770-173006567	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv511188	chr2:173001058-173006031	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
3	esv1842589	chr2:173001058-173006567	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv528818	chr2:173001058-173013373	Bivalent/Poised TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv583631	chr2:173001533-173006567	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv583632	chr2:173001533-173006833	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv435726	chr2:173001856-173008530	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv3459871	chr2:173002306-173009204	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3524175	chr2:173002605-173009327	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv3451254	chr2:173003006-173008754	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173002200-173012600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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