Variant report

Variant	rs2884155
Chromosome Location	chr2:173019144-173019145
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10930521	0.91[EUR][1000 genomes]
rs12466775	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12468831	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12692981	0.80[CEU][hapmap];1.00[GIH][hapmap];0.84[MEX][hapmap];0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs13009919	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.94[MEX][hapmap];0.97[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13010989	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs13015819	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs13390758	0.82[EUR][1000 genomes]
rs2054831	1.00[JPT][hapmap]
rs2357318	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34158453	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35412286	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35547635	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7582678	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7597273	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875413	chr2:173009413-173097343	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs2884155	G6PC2	cis	parietal	SCAN
rs2884155	DHRS9	cis	cerebellum	SCAN
rs2884155	MAP4	trans	parietal	SCAN
rs2884155	OLA1	cis	cerebellum	SCAN

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:173017200-173019200	Enhancers	Dnd41	blood
2	chr2:173017600-173019600	Enhancers	Fetal Thymus	thymus
3	chr2:173017600-173020200	Enhancers	Thymus	Thymus
4	chr2:173018400-173019200	Enhancers	Primary T cells from cord blood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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