Variant report

Variant	rs12694014
Chromosome Location	chr2:205940645-205940646
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10084396	1.00[AMR][1000 genomes]
rs10166926	1.00[AMR][1000 genomes]
rs1017399	1.00[AMR][1000 genomes]
rs1368947	1.00[AMR][1000 genomes]
rs1434155	1.00[AMR][1000 genomes]
rs1510767	1.00[AMR][1000 genomes]
rs1510768	1.00[AMR][1000 genomes]
rs1540362	1.00[AMR][1000 genomes]
rs1540363	1.00[AMR][1000 genomes]
rs1567502	1.00[AMR][1000 genomes]
rs4673312	1.00[AMR][1000 genomes]
rs4673314	1.00[AMR][1000 genomes]
rs4675479	1.00[AMR][1000 genomes]
rs4675480	1.00[AMR][1000 genomes]
rs4675483	1.00[AMR][1000 genomes]
rs4675492	1.00[AMR][1000 genomes]
rs4675493	1.00[AMR][1000 genomes]
rs6748535	1.00[AMR][1000 genomes]
rs7424966	1.00[AMR][1000 genomes]
rs7585765	1.00[AMR][1000 genomes]
rs7602418	1.00[AMR][1000 genomes]
rs7607440	1.00[AMR][1000 genomes]
rs849105	1.00[AMR][1000 genomes]
rs849108	1.00[AMR][1000 genomes]
rs849112	1.00[AMR][1000 genomes]
rs849114	1.00[AMR][1000 genomes]
rs849117	1.00[AMR][1000 genomes]
rs849130	1.00[AMR][1000 genomes]
rs849131	1.00[AMR][1000 genomes]
rs971766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205921400-205943600	Weak transcription	Aorta	Aorta
2	chr2:205932800-205941200	Weak transcription	Pancreas	Pancrea
3	chr2:205935200-205943600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr2:205935400-205943800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:205935600-205941200	Weak transcription	H1 Cell Line	embryonic stem cell
6	chr2:205936000-205943600	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr2:205938600-205940800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr2:205938800-205941200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr2:205939200-205941200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr2:205939400-205940800	Enhancers	Primary T helper cells PMA-I stimulated	--
11	chr2:205939400-205941200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr2:205939400-205941800	Enhancers	Primary T cells from cord blood	blood
13	chr2:205939800-205941000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
14	chr2:205940200-205942800	Weak transcription	Gastric	stomach
15	chr2:205940400-205942000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
16	chr2:205940400-205942000	Enhancers	Primary T helper cells fromperipheralblood	blood
17	chr2:205940400-205945400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links