Variant report

Variant	rs6748535
Chromosome Location	chr2:205853916-205853917
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:205850974..205855077-chr2:205860950..205863389,3	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10084396	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10166926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1017399	1.00[AMR][1000 genomes]
rs11690289	1.00[AFR][1000 genomes]
rs12694014	1.00[AMR][1000 genomes]
rs1368947	1.00[AMR][1000 genomes]
rs1434155	1.00[AMR][1000 genomes]
rs1510766	1.00[EUR][1000 genomes]
rs1510767	1.00[AMR][1000 genomes]
rs1510768	1.00[AMR][1000 genomes]
rs1567502	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2878490	1.00[AFR][1000 genomes]
rs4145000	1.00[EUR][1000 genomes]
rs4673312	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4673314	1.00[AMR][1000 genomes]
rs4675479	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4675480	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4675483	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4675492	1.00[AMR][1000 genomes]
rs4675493	1.00[AMR][1000 genomes]
rs73054969	1.00[EUR][1000 genomes]
rs73054972	1.00[EUR][1000 genomes]
rs73054975	1.00[EUR][1000 genomes]
rs73982803	1.00[EUR][1000 genomes]
rs7424966	1.00[AMR][1000 genomes]
rs7580880	1.00[EUR][1000 genomes]
rs7585765	1.00[AMR][1000 genomes]
rs7602418	1.00[AMR][1000 genomes]
rs7607440	1.00[AMR][1000 genomes]
rs849105	1.00[AMR][1000 genomes]
rs849108	1.00[AMR][1000 genomes]
rs849112	1.00[AMR][1000 genomes]
rs849114	1.00[AMR][1000 genomes]
rs849117	1.00[AMR][1000 genomes]
rs849130	1.00[AMR][1000 genomes]
rs849131	1.00[AMR][1000 genomes]
rs971766	1.00[AMR][1000 genomes]
rs976118	1.00[EUR][1000 genomes]
rs976119	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv875728	chr2:205853136-205906945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205849600-205878400	Weak transcription	HSMMtube	muscle

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