Variant report

Variant	rs1434155
Chromosome Location	chr2:205930161-205930162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10084396	1.00[AMR][1000 genomes]
rs10166926	1.00[AMR][1000 genomes]
rs1017399	1.00[AMR][1000 genomes]
rs12694014	1.00[AMR][1000 genomes]
rs1368947	1.00[AMR][1000 genomes]
rs1510767	1.00[AMR][1000 genomes]
rs1510768	1.00[AMR][1000 genomes]
rs1540362	1.00[AMR][1000 genomes]
rs1540363	1.00[AMR][1000 genomes]
rs1567502	1.00[AMR][1000 genomes]
rs4673312	1.00[AMR][1000 genomes]
rs4673314	1.00[AMR][1000 genomes]
rs4675479	1.00[AMR][1000 genomes]
rs4675480	1.00[AMR][1000 genomes]
rs4675483	1.00[AMR][1000 genomes]
rs4675492	1.00[AMR][1000 genomes]
rs4675493	1.00[AMR][1000 genomes]
rs6748535	1.00[AMR][1000 genomes]
rs7424966	1.00[AMR][1000 genomes]
rs7585765	1.00[AMR][1000 genomes]
rs7602418	1.00[AMR][1000 genomes]
rs7607440	1.00[AMR][1000 genomes]
rs849105	1.00[AMR][1000 genomes]
rs849108	1.00[AMR][1000 genomes]
rs849112	1.00[AMR][1000 genomes]
rs849114	1.00[AMR][1000 genomes]
rs849117	1.00[AMR][1000 genomes]
rs849130	1.00[AMR][1000 genomes]
rs849131	1.00[AMR][1000 genomes]
rs971766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv16739	chr2:205898770-206127984	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205921400-205932600	Weak transcription	HSMMtube	muscle
2	chr2:205921400-205943600	Weak transcription	Aorta	Aorta
3	chr2:205925000-205930400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:205925400-205934400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr2:205925400-205934600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr2:205925800-205934600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:205927400-205934400	Weak transcription	HUES48 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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