Variant report

Variant	rs1368947
Chromosome Location	chr2:205884211-205884212
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10084396	1.00[AMR][1000 genomes]
rs10166926	1.00[AMR][1000 genomes]
rs1017399	1.00[AMR][1000 genomes]
rs12694014	1.00[AMR][1000 genomes]
rs1434155	1.00[AMR][1000 genomes]
rs1510767	1.00[AMR][1000 genomes]
rs1510768	1.00[AMR][1000 genomes]
rs1567502	1.00[AMR][1000 genomes]
rs4673312	1.00[AMR][1000 genomes]
rs4673314	1.00[AMR][1000 genomes]
rs4675479	1.00[AMR][1000 genomes]
rs4675480	1.00[AMR][1000 genomes]
rs4675483	1.00[AMR][1000 genomes]
rs4675492	1.00[AMR][1000 genomes]
rs4675493	1.00[AMR][1000 genomes]
rs6748535	1.00[AMR][1000 genomes]
rs7424966	1.00[AMR][1000 genomes]
rs7585765	1.00[AMR][1000 genomes]
rs7602418	1.00[AMR][1000 genomes]
rs7607440	1.00[AMR][1000 genomes]
rs849105	1.00[AMR][1000 genomes]
rs849108	1.00[AMR][1000 genomes]
rs849112	1.00[AMR][1000 genomes]
rs849114	1.00[AMR][1000 genomes]
rs849117	1.00[AMR][1000 genomes]
rs849130	1.00[AMR][1000 genomes]
rs849131	1.00[AMR][1000 genomes]
rs971766	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv998485	chr2:205407813-206184006	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv536122	chr2:205407813-206184006	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv1010210	chr2:205489653-206076013	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv875728	chr2:205853136-205906945	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:205877800-205887800	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:205878600-205895400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr2:205882600-205887200	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr2:205882600-205887600	Weak transcription	Stomach Smooth Muscle	stomach
5	chr2:205882600-205889600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr2:205882800-205885400	Weak transcription	Pancreatic Islets	Pancreatic Islet
7	chr2:205882800-205887400	Weak transcription	Brain Angular Gyrus	brain
8	chr2:205882800-205887400	Weak transcription	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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