Variant report

Variant	rs12699751
Chromosome Location	chr7:15819321-15819322
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10274111	1.00[ASN][1000 genomes]
rs10275854	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13231763	0.90[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13234197	1.00[ASN][1000 genomes]
rs13243619	0.91[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34025135	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34436080	0.95[EUR][1000 genomes]
rs34626718	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35776481	0.85[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs67433630	0.95[EUR][1000 genomes]
rs6946072	0.93[EUR][1000 genomes]
rs6962221	0.93[EUR][1000 genomes]
rs6969361	0.87[EUR][1000 genomes]
rs6980151	0.93[EUR][1000 genomes]
rs71540719	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7806888	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15808000-15820000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:15814600-15823400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:15817200-15821400	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr7:15818000-15820000	Weak transcription	Fetal Lung	lung
5	chr7:15818200-15820600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr7:15818200-15820600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr7:15818200-15820600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
8	chr7:15818200-15822200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:15818200-15822600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr7:15818200-15823600	Weak transcription	Left Ventricle	heart
11	chr7:15818200-15823600	Weak transcription	Right Atrium	heart
12	chr7:15818400-15823200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr7:15818400-15823600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:15818600-15821200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr7:15819200-15820000	Weak transcription	Ovary	ovary
16	chr7:15819200-15821400	Weak transcription	HUES64 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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