Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10234886	0.88[ASN][1000 genomes]
rs10238237	0.89[ASN][1000 genomes]
rs10248805	0.94[ASN][1000 genomes]
rs10264302	0.88[ASN][1000 genomes]
rs10275854	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10950576	0.96[ASN][1000 genomes]
rs12699751	0.87[EUR][1000 genomes]
rs13231763	0.82[EUR][1000 genomes]
rs17169055	0.88[ASN][1000 genomes]
rs17169056	0.88[ASN][1000 genomes]
rs17169060	0.87[ASN][1000 genomes]
rs1942653	0.95[ASN][1000 genomes]
rs2215376	0.88[ASN][1000 genomes]
rs34436080	0.91[EUR][1000 genomes]
rs55942513	0.92[ASN][1000 genomes]
rs57450585	0.88[ASN][1000 genomes]
rs60115355	0.97[ASN][1000 genomes]
rs61619427	0.89[ASN][1000 genomes]
rs67433630	0.91[EUR][1000 genomes]
rs6942856	0.91[ASN][1000 genomes]
rs6946072	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6954991	0.89[ASN][1000 genomes]
rs6962221	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6975327	0.87[ASN][1000 genomes]
rs6980151	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71540719	0.82[EUR][1000 genomes]
rs73295700	0.95[ASN][1000 genomes]
rs73297809	0.96[ASN][1000 genomes]
rs73297848	0.81[ASN][1000 genomes]
rs7806888	0.89[EUR][1000 genomes]
rs9769136	0.89[ASN][1000 genomes]
rs9769335	0.89[ASN][1000 genomes]
rs985082	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830911	chr7:15666307-15817662	Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv428501	chr7:15666307-15817662	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15808000-15820000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr7:15814600-15823400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr7:15814800-15818000	Weak transcription	Right Atrium	heart
4	chr7:15816800-15818000	Enhancers	Fetal Lung	lung
5	chr7:15816800-15818200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:15816800-15818400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr7:15817000-15818200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr7:15817000-15818400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr7:15817200-15818000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr7:15817200-15818000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr7:15817200-15818200	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr7:15817200-15821400	Weak transcription	H9 Cell Line	embryonic stem cell

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