Variant report

Variant	rs985082
Chromosome Location	chr7:15820238-15820239
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10234886	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10238237	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10248805	0.97[ASN][1000 genomes]
rs10264302	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10950576	0.97[ASN][1000 genomes]
rs11982227	1.00[AMR][1000 genomes]
rs17169055	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17169056	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17169060	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1942653	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2019593	1.00[EUR][1000 genomes]
rs2098047	1.00[EUR][1000 genomes]
rs2215376	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55942513	0.95[ASN][1000 genomes]
rs57450585	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60115355	0.96[ASN][1000 genomes]
rs61619427	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6942856	0.91[ASN][1000 genomes]
rs6946072	0.98[ASN][1000 genomes]
rs6954991	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6962221	0.98[ASN][1000 genomes]
rs6969361	0.95[ASN][1000 genomes]
rs6975327	1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6980151	0.98[ASN][1000 genomes]
rs73295700	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs73297809	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73297848	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9769136	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9769335	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15814600-15823400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr7:15817200-15821400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr7:15818200-15820600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr7:15818200-15820600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr7:15818200-15820600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr7:15818200-15822200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr7:15818200-15822600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr7:15818200-15823600	Weak transcription	Left Ventricle	heart
9	chr7:15818200-15823600	Weak transcription	Right Atrium	heart
10	chr7:15818400-15823200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr7:15818400-15823600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr7:15818600-15821200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr7:15819200-15821400	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr7:15819800-15820600	Enhancers	HUVEC	blood vessel
15	chr7:15820000-15821400	Enhancers	HUES6 Cell Line	embryonic stem cell
16	chr7:15820000-15821800	Enhancers	Fetal Lung	lung
17	chr7:15820000-15822400	Enhancers	ES-I3 Cell Line	embryonic stem cell
18	chr7:15820200-15821600	Weak transcription	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links