Variant report

Variant	rs73297809
Chromosome Location	chr7:15813479-15813480
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10234886	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10238237	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10248805	0.98[ASN][1000 genomes]
rs10264302	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10950576	0.98[ASN][1000 genomes]
rs11982227	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169055	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17169056	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17169060	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1942653	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2019593	1.00[EUR][1000 genomes]
rs2098047	1.00[EUR][1000 genomes]
rs2215376	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55942513	0.96[ASN][1000 genomes]
rs57450585	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60115355	0.97[ASN][1000 genomes]
rs61619427	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6942856	0.91[ASN][1000 genomes]
rs6946072	0.97[ASN][1000 genomes]
rs6954991	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6962221	0.97[ASN][1000 genomes]
rs6969361	0.96[ASN][1000 genomes]
rs6975327	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6980151	0.97[ASN][1000 genomes]
rs73295700	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73297848	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7800572	0.82[AFR][1000 genomes]
rs7809611	0.85[AFR][1000 genomes]
rs9769136	1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9769335	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs985082	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830911	chr7:15666307-15817662	Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv428501	chr7:15666307-15817662	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15808000-15820000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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