Variant report

Variant	rs6942856
Chromosome Location	chr7:15799822-15799823
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10234886	0.94[ASN][1000 genomes]
rs10238237	0.97[ASN][1000 genomes]
rs10248805	0.91[ASN][1000 genomes]
rs10264302	0.94[ASN][1000 genomes]
rs10274111	0.95[EUR][1000 genomes]
rs10950576	0.93[ASN][1000 genomes]
rs13234197	0.90[EUR][1000 genomes]
rs13243619	0.90[EUR][1000 genomes]
rs17169055	0.94[ASN][1000 genomes]
rs17169056	0.94[ASN][1000 genomes]
rs17169060	0.95[ASN][1000 genomes]
rs1942653	0.92[ASN][1000 genomes]
rs2215376	0.87[ASN][1000 genomes]
rs34025135	0.95[EUR][1000 genomes]
rs34626718	0.86[EUR][1000 genomes]
rs35776481	0.91[EUR][1000 genomes]
rs55942513	0.93[ASN][1000 genomes]
rs57450585	0.87[ASN][1000 genomes]
rs60115355	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61619427	0.97[ASN][1000 genomes]
rs6946072	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6954991	0.97[ASN][1000 genomes]
rs6962221	0.94[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs6969361	0.91[ASN][1000 genomes]
rs6975327	0.95[ASN][1000 genomes]
rs6980151	0.89[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs73295700	0.92[ASN][1000 genomes]
rs73297809	0.91[ASN][1000 genomes]
rs73297848	0.81[ASN][1000 genomes]
rs9769136	0.97[ASN][1000 genomes]
rs9769335	0.97[ASN][1000 genomes]
rs985082	0.91[ASN][1000 genomes]
rs9969387	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830911	chr7:15666307-15817662	Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv428501	chr7:15666307-15817662	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15797400-15804000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr7:15797800-15804600	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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