Variant report

Variant	rs73297848
Chromosome Location	chr7:15824518-15824519
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10234886	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10238237	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10248805	0.83[ASN][1000 genomes]
rs10264302	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs10950576	0.83[ASN][1000 genomes]
rs11982227	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169055	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17169056	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs17169060	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1942653	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2019593	1.00[EUR][1000 genomes]
rs2098047	1.00[EUR][1000 genomes]
rs2215376	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55942513	0.83[ASN][1000 genomes]
rs57450585	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs60115355	0.82[ASN][1000 genomes]
rs61619427	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6942856	0.81[ASN][1000 genomes]
rs6946072	0.84[ASN][1000 genomes]
rs6954991	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6962221	0.84[ASN][1000 genomes]
rs6969361	0.81[ASN][1000 genomes]
rs6975327	1.00[EUR][1000 genomes]
rs6980151	0.84[ASN][1000 genomes]
rs73295700	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73297809	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9769136	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9769335	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs985082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15822000-15825000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr7:15822200-15824600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr7:15822600-15824800	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr7:15823600-15824600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:15823600-15824600	Enhancers	H9 Cell Line	embryonic stem cell
6	chr7:15823600-15824600	Enhancers	Brain Substantia Nigra	brain
7	chr7:15823600-15824600	Enhancers	Fetal Kidney	kidney
8	chr7:15823600-15824800	Enhancers	Colon Smooth Muscle	Colon
9	chr7:15824000-15825000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:15824000-15826000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr7:15824200-15824800	Enhancers	Brain Cingulate Gyrus	brain
12	chr7:15824200-15825400	Enhancers	Fetal Lung	lung

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