Variant report

Variant	rs11982227
Chromosome Location	chr7:15793299-15793300
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs17169060	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2215376	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4332034	0.98[ASN][1000 genomes]
rs55941818	0.98[ASN][1000 genomes]
rs57450585	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6461207	1.00[ASN][1000 genomes]
rs6957483	0.82[ASN][1000 genomes]
rs6972475	0.96[ASN][1000 genomes]
rs73295700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297809	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73297848	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7786704	1.00[ASN][1000 genomes]
rs7790580	1.00[ASN][1000 genomes]
rs7800572	0.87[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs7809611	0.93[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs9769335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs985082	1.00[AMR][1000 genomes]
rs9969387	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830911	chr7:15666307-15817662	Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv428501	chr7:15666307-15817662	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv527639	chr7:15766594-15795567	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15788000-15793400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:15790000-15793800	Weak transcription	Fetal Lung	lung
3	chr7:15791800-15797800	Enhancers	Osteobl	bone
4	chr7:15792000-15793400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:15792000-15795400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:15792200-15793600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:15792400-15793400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr7:15792400-15793400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr7:15793000-15794600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:15793000-15794800	Enhancers	Colon Smooth Muscle	Colon
11	chr7:15793000-15797800	Enhancers	NHDF-Ad	bronchial
12	chr7:15793200-15793400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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