Variant report

Variant	rs9769335
Chromosome Location	chr7:15795567-15795568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10234886	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10238237	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10248805	0.92[ASN][1000 genomes]
rs10264302	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10950576	0.92[ASN][1000 genomes]
rs11982227	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169055	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17169056	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17169060	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1942653	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2019593	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2098047	1.00[EUR][1000 genomes]
rs2215376	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55942513	0.94[ASN][1000 genomes]
rs57450585	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs60115355	0.91[ASN][1000 genomes]
rs61619427	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942856	0.97[ASN][1000 genomes]
rs6946072	0.90[ASN][1000 genomes]
rs6954991	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6962221	0.90[ASN][1000 genomes]
rs6969361	0.89[ASN][1000 genomes]
rs6975327	1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6980151	0.90[ASN][1000 genomes]
rs73295700	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73297809	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73297848	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs73682910	0.82[ASN][1000 genomes]
rs7800572	0.87[AFR][1000 genomes]
rs7809611	0.93[AFR][1000 genomes]
rs9769136	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs985082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830911	chr7:15666307-15817662	Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv428501	chr7:15666307-15817662	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv527639	chr7:15766594-15795567	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15791800-15797800	Enhancers	Osteobl	bone
2	chr7:15793000-15797800	Enhancers	NHDF-Ad	bronchial
3	chr7:15793400-15797600	Enhancers	Rectal Smooth Muscle	rectum
4	chr7:15794400-15797600	Weak transcription	Fetal Lung	lung
5	chr7:15794400-15797800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr7:15794800-15796000	Weak transcription	Colon Smooth Muscle	Colon
7	chr7:15794800-15796400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr7:15795000-15796600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:15795400-15796600	Weak transcription	Muscle Satellite Cultured Cells	--

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