Variant report

Variant	rs17169056
Chromosome Location	chr7:15790826-15790827
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10234886	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10238237	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10248805	0.90[ASN][1000 genomes]
rs10264302	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10950576	0.90[ASN][1000 genomes]
rs17169055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17169060	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1942653	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2019593	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2098047	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2215376	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55942513	0.91[ASN][1000 genomes]
rs57450585	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60115355	0.89[ASN][1000 genomes]
rs61619427	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6942856	0.94[ASN][1000 genomes]
rs6946072	0.89[ASN][1000 genomes]
rs6954991	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6962221	0.89[ASN][1000 genomes]
rs6969361	0.88[ASN][1000 genomes]
rs6975327	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6980151	0.89[ASN][1000 genomes]
rs73295700	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73297809	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73297848	1.00[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs73682910	0.84[ASN][1000 genomes]
rs9769136	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9769335	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs985082	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830911	chr7:15666307-15817662	Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv428501	chr7:15666307-15817662	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv527639	chr7:15766594-15795567	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15788000-15791200	Weak transcription	Adipose Nuclei	Adipose
2	chr7:15788000-15793400	Weak transcription	Stomach Smooth Muscle	stomach
3	chr7:15789000-15791000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:15789000-15791200	Enhancers	NHDF-Ad	bronchial
5	chr7:15789200-15791200	Enhancers	Fetal Heart	heart
6	chr7:15789200-15791400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr7:15789400-15792600	Enhancers	Colon Smooth Muscle	Colon
8	chr7:15789800-15791200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr7:15789800-15791400	Enhancers	NHLF	lung
10	chr7:15790000-15791000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr7:15790000-15793800	Weak transcription	Fetal Lung	lung
12	chr7:15790200-15791000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr7:15790200-15791200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:15790400-15791800	Enhancers	Aorta	Aorta
15	chr7:15790600-15791000	Enhancers	Muscle Satellite Cultured Cells	--
16	chr7:15790600-15791000	Weak transcription	Rectal Smooth Muscle	rectum
17	chr7:15790800-15791000	Enhancers	Osteobl	bone

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