Variant report

Variant	rs57450585
Chromosome Location	chr7:15823555-15823556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10234886	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10238237	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10248805	0.89[ASN][1000 genomes]
rs10264302	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10950576	0.89[ASN][1000 genomes]
rs11982227	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17169055	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17169056	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17169060	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1942653	1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2019593	1.00[EUR][1000 genomes]
rs2098047	1.00[EUR][1000 genomes]
rs2215376	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55942513	0.89[ASN][1000 genomes]
rs60115355	0.89[ASN][1000 genomes]
rs61619427	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6942856	0.87[ASN][1000 genomes]
rs6946072	0.90[ASN][1000 genomes]
rs6954991	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6962221	0.90[ASN][1000 genomes]
rs6969361	0.88[ASN][1000 genomes]
rs6975327	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6980151	0.90[ASN][1000 genomes]
rs73295700	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs73297809	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73297848	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9769136	1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9769335	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs985082	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15818200-15823600	Weak transcription	Left Ventricle	heart
2	chr7:15818200-15823600	Weak transcription	Right Atrium	heart
3	chr7:15818400-15823600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr7:15821400-15824400	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr7:15821600-15824200	Enhancers	Rectal Smooth Muscle	rectum
6	chr7:15821800-15823600	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:15822000-15823600	Weak transcription	NHDF-Ad	bronchial
8	chr7:15822000-15825000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr7:15822200-15824600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr7:15822400-15823600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr7:15822400-15823600	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr7:15822400-15823600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr7:15822400-15823600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
14	chr7:15822400-15823600	Weak transcription	Colon Smooth Muscle	Colon
15	chr7:15822600-15823600	Enhancers	Fetal Lung	lung
16	chr7:15822600-15824800	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr7:15823000-15824200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr7:15823200-15824200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr7:15823400-15824000	Enhancers	iPS-20b Cell Line	embryonic stem cell
20	chr7:15823400-15824000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:15823400-15824200	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr7:15823400-15824200	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr7:15823400-15824400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr7:15823400-15824400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr7:15823400-15824400	Enhancers	Fetal Stomach	stomach

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