Variant report

Variant	rs34626718
Chromosome Location	chr7:15824275-15824276
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10274111	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10275854	1.00[ASN][1000 genomes]
rs12699751	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs13231763	0.90[AFR][1000 genomes]
rs13234197	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13243619	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34025135	0.90[AFR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35776481	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6942856	0.86[EUR][1000 genomes]
rs71540719	1.00[AFR][1000 genomes]
rs7806888	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15821400-15824400	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr7:15822000-15825000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr7:15822200-15824600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr7:15822600-15824800	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr7:15823400-15824400	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr7:15823400-15824400	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr7:15823400-15824400	Enhancers	Fetal Stomach	stomach
8	chr7:15823600-15824400	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr7:15823600-15824400	Enhancers	Fetal Muscle Leg	muscle
10	chr7:15823600-15824600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr7:15823600-15824600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr7:15823600-15824600	Enhancers	Brain Substantia Nigra	brain
13	chr7:15823600-15824600	Enhancers	Fetal Kidney	kidney
14	chr7:15823600-15824800	Enhancers	Colon Smooth Muscle	Colon
15	chr7:15823800-15824400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:15823800-15824400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr7:15823800-15824400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
18	chr7:15824000-15824400	Enhancers	Brain Anterior Caudate	brain
19	chr7:15824000-15825000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr7:15824000-15826000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr7:15824200-15824800	Enhancers	Brain Cingulate Gyrus	brain
22	chr7:15824200-15825400	Enhancers	Fetal Lung	lung

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