Variant report

Variant	rs71540719
Chromosome Location	chr7:15793062-15793063
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10275854	0.88[EUR][1000 genomes]
rs12699751	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs13231763	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34025135	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs34410448	1.00[ASN][1000 genomes]
rs34436080	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34626718	1.00[AFR][1000 genomes]
rs4527782	1.00[ASN][1000 genomes]
rs67433630	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6969361	0.82[EUR][1000 genomes]
rs7806888	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932168	chr7:15573437-15895294	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv523199	chr7:15582208-16042596	Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	nsv830911	chr7:15666307-15817662	Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv428501	chr7:15666307-15817662	Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv527639	chr7:15766594-15795567	Flanking Active TSS Enhancers Weak transcription Active TSS	n/a	n/a	inside rSNPs	n/a

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:15788000-15793400	Weak transcription	Stomach Smooth Muscle	stomach
2	chr7:15790000-15793800	Weak transcription	Fetal Lung	lung
3	chr7:15791800-15797800	Enhancers	Osteobl	bone
4	chr7:15792000-15793400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:15792000-15795400	Enhancers	Muscle Satellite Cultured Cells	--
6	chr7:15792200-15793600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr7:15792400-15793200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr7:15792400-15793400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr7:15792400-15793400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr7:15793000-15794600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr7:15793000-15794800	Enhancers	Colon Smooth Muscle	Colon
12	chr7:15793000-15797800	Enhancers	NHDF-Ad	bronchial

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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