Variant report
Variant | rs12700741 |
---|---|
Chromosome Location | chr7:26562592-26562593 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:3 , 50 per page) page:
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(count:1 , 50 per page) page:
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No. | lncRNA name | Chromosome Location | lncRNA alias |
---|---|---|---|
1 | lnc-C7orf71-6 | chr7:26560953-26563344 | NONHSAT119645 |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000086300 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs1076284 | 0.92[ASN][1000 genomes] |
rs12537002 | 0.92[ASN][1000 genomes] |
rs12700742 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12700746 | 0.81[ASN][1000 genomes] |
rs13243495 | 0.81[ASN][1000 genomes] |
rs17153874 | 0.81[ASN][1000 genomes] |
rs17283843 | 0.92[ASN][1000 genomes] |
rs2391282 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs2391284 | 0.92[ASN][1000 genomes] |
rs34066752 | 0.81[ASN][1000 genomes] |
rs35496114 | 0.81[ASN][1000 genomes] |
rs3757656 | 0.92[ASN][1000 genomes] |
rs4289709 | 0.92[ASN][1000 genomes] |
rs4719871 | 0.92[ASN][1000 genomes] |
rs4719872 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4722605 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes] |
rs4722606 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs4722607 | 0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs4722609 | 0.81[ASN][1000 genomes] |
rs6943220 | 0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes] |
rs6957136 | 0.92[ASN][1000 genomes] |
rs6957786 | 0.92[ASN][1000 genomes] |
rs6968080 | 0.92[ASN][1000 genomes] |
rs6968655 | 0.83[ASN][1000 genomes] |
rs71521773 | 0.81[ASN][1000 genomes] |
rs71521774 | 0.81[ASN][1000 genomes] |
rs71521775 | 0.81[ASN][1000 genomes] |
rs71521777 | 0.81[ASN][1000 genomes] |
rs73063761 | 0.92[ASN][1000 genomes] |
rs73063763 | 0.86[ASN][1000 genomes] |
rs73063794 | 0.92[ASN][1000 genomes] |
rs740185 | 0.81[ASN][1000 genomes] |
rs740186 | 0.81[ASN][1000 genomes] |
rs740187 | 0.81[ASN][1000 genomes] |
rs757804 | 0.92[ASN][1000 genomes] |
rs886716 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs886717 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rs886719 | 0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv1029596 | chr7:26302739-26737913 | Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
2 | nsv538804 | chr7:26302739-26737913 | Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 25 gene(s) | inside rSNPs | diseases |
3 | nsv1025538 | chr7:26482342-27376045 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
4 | nsv538805 | chr7:26482342-27376045 | Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 213 gene(s) | inside rSNPs | diseases |
No data |