Variant report

Variant	rs3757656
Chromosome Location	chr7:26579656-26579657
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr7:26579614-26579664	AG09309	skin:	n/a
2	chr7:26579614-26579664	HCPEpiC	choroid plexus:	n/a
3	chr7:26579614-26579664	K562	blood:	n/a
4	chr7:26579614-26579664	A549	lung:	n/a
5	chr7:26579614-26579664	Caco-2	colon:	n/a
6	chr7:26579614-26579664	LNCaP	prostate:	n/a
7	chr7:26579614-26579664	SK-N-SH	brain:	n/a
8	chr7:26579614-26579664	HRE	kidney:	n/a
9	chr7:26579614-26579664	NT2-D1	testis:	n/a
10	chr7:26579614-26579664	GM06990	blood:	n/a
11	chr7:26579614-26579664	AoSMC	blood vessel:	n/a
12	chr7:26579614-26579664	ECC-1	luminal epithelium:	n/a
13	chr7:26579614-26579664	SAEC	small airway:	n/a
14	chr7:26579614-26579664	Hela-S3	cervix:	n/a
15	chr7:26579614-26579664	HEK293	kidney:	embryo
16	chr7:26579614-26579664	GM19239	blood:	n/a
17	chr7:26579614-26579664	AG09319	gingival:	n/a
18	chr7:26579614-26579664	HCF	heart:	n/a
19	chr7:26579614-26579664	AG04450	lung:	fetal
20	chr7:26579614-26579664	GM12891	blood:	n/a
21	chr7:26579614-26579664	HCM	heart:	n/a
22	chr7:26579614-26579664	HRCEpiC	kidney:	n/a
23	chr7:26579614-26579664	PrEC	prostate:	n/a
24	chr7:26579614-26579664	MCF-7	breast:	n/a
25	chr7:26579614-26579664	ovcar-3	ovarian:	n/a
26	chr7:26579614-26579664	NH-A	brain:	n/a
27	chr7:26579614-26579664	RPTEC	kidney:	n/a
28	chr7:26579614-26579664	HIPEpiC	eye:	n/a
29	chr7:26579614-26579664	AG10803	skin:	n/a
30	chr7:26579614-26579664	PFSK-1	brain:	n/a
31	chr7:26579614-26579664	HL-60	blood:	n/a
32	chr7:26579614-26579664	HepG2	liver:	n/a
33	chr7:26579614-26579664	HMEC	breast:	n/a
34	chr7:26579614-26579664	IMR90	lung:	fetal
35	chr7:26579614-26579664	H1-hESC	embryonic stem cell:	embryo
36	chr7:26579614-26579664	SK-N-SH_RA	brain:	n/a
37	chr7:26579614-26579664	GM12892	blood:	n/a
38	chr7:26579614-26579664	BJ	skin:	n/a
39	chr7:26579614-26579664	Jurkat	blood:	n/a
40	chr7:26579614-26579664	SKMC	muscle:	n/a
41	chr7:26579614-26579664	NHDF-neo	bronchial:	n/a
42	chr7:26579614-26579664	NB4	blood:	n/a
43	chr7:26579614-26579664	MCF10A-Er-Src	breast:	n/a
44	chr7:26579614-26579664	HUVEC	blood vessel:	n/a
45	chr7:26579614-26579664	HRPEpiC	eye:	n/a
46	chr7:26579614-26579664	SK-N-MC	brain:	n/a
47	chr7:26579614-26579664	T-47D	breast:	n/a
48	chr7:26579614-26579664	HCT-116	colon:	n/a
49	chr7:26579614-26579664	BE2_C	brain:	n/a
50	chr7:26579614-26579664	ProgFib	skin:	n/a

No data

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf71-5	chr7:26578805-26580511	NONHSAT119648

No data

Variant related genes	Relation type
KIAA0087	CpG island

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs1047022	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1076284	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12537002	1.00[ASN][1000 genomes]
rs12700741	0.92[ASN][1000 genomes]
rs12700742	1.00[CHB][hapmap];0.85[JPT][hapmap];0.92[ASN][1000 genomes]
rs17153945	0.85[ASN][1000 genomes]
rs17283843	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs17284017	0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs2391284	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4289709	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4719871	1.00[ASN][1000 genomes]
rs4719872	0.92[ASN][1000 genomes]
rs4722607	0.92[ASN][1000 genomes]
rs4722609	0.82[ASN][1000 genomes]
rs6957136	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6957786	1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6968080	1.00[ASN][1000 genomes]
rs6968655	0.91[ASN][1000 genomes]
rs71521775	0.82[ASN][1000 genomes]
rs71521777	0.82[ASN][1000 genomes]
rs73063761	1.00[ASN][1000 genomes]
rs73063763	0.81[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs73063794	0.88[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740185	0.82[ASN][1000 genomes]
rs740186	0.82[ASN][1000 genomes]
rs740187	0.82[ASN][1000 genomes]
rs757804	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26578600-26579800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr7:26578600-26582000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr7:26578800-26591600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr7:26579400-26589000	Weak transcription	Fetal Thymus	thymus
5	chr7:26579600-26582600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr7:26579600-26582800	Weak transcription	Primary hematopoietic stem cells	blood

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