Variant report

Variant	rs4722609
Chromosome Location	chr7:26595402-26595403
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26592279..26596183-chr7:26596578..26600236,5	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-C7orf71-1	chr7:26594428-26596819	ENSG00000233760

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1076284	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12537002	0.82[ASN][1000 genomes]
rs12700741	0.81[ASN][1000 genomes]
rs12700742	0.81[ASN][1000 genomes]
rs17153945	0.97[ASN][1000 genomes]
rs17283843	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2391284	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs3757656	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4289709	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs4719871	0.82[ASN][1000 genomes]
rs4719872	0.81[ASN][1000 genomes]
rs4722607	0.81[ASN][1000 genomes]
rs6957136	0.82[ASN][1000 genomes]
rs6957786	0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs6968080	0.82[ASN][1000 genomes]
rs71521775	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71521776	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs71521777	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063761	0.82[ASN][1000 genomes]
rs73063794	0.82[ASN][1000 genomes]
rs740184	0.96[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs740185	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740186	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs740187	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs757804	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
5	nsv830929	chr7:26587888-26749735	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26586800-26595600	Weak transcription	Fetal Kidney	kidney
2	chr7:26588000-26596600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr7:26589000-26595800	Weak transcription	Lung	lung
4	chr7:26589600-26598000	Weak transcription	Right Atrium	heart
5	chr7:26589800-26595800	Weak transcription	Gastric	stomach
6	chr7:26590800-26595800	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr7:26591600-26600000	Weak transcription	Hela-S3	cervix
8	chr7:26592200-26596000	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr7:26593000-26595600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr7:26593400-26595800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr7:26593600-26595800	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr7:26593600-26607000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr7:26593800-26596600	Enhancers	Fetal Stomach	stomach
14	chr7:26594000-26595600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
15	chr7:26594600-26595600	Enhancers	Fetal Brain Female	brain
16	chr7:26594800-26596200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr7:26595000-26596000	Weak transcription	Primary hematopoietic stem cells	blood
18	chr7:26595200-26596600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
19	chr7:26595400-26595600	Enhancers	Brain Germinal Matrix	brain
20	chr7:26595400-26596400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr7:26595400-26596400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr7:26595400-26596600	Enhancers	Fetal Brain Male	brain
23	chr7:26595400-26596600	Enhancers	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links