Variant report

Variant	rs4719871
Chromosome Location	chr7:26555578-26555579
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:26553820..26557450-chr7:26559159..26560865,3	K562	blood:
2	chr7:26554794..26556957-chr7:26561161..26563365,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs1047022	0.84[AFR][1000 genomes]
rs1076284	1.00[ASN][1000 genomes]
rs12537002	1.00[ASN][1000 genomes]
rs12700741	0.92[ASN][1000 genomes]
rs12700742	0.92[ASN][1000 genomes]
rs17153945	0.85[ASN][1000 genomes]
rs17283843	1.00[ASN][1000 genomes]
rs17284017	0.80[ASN][1000 genomes]
rs2391284	1.00[ASN][1000 genomes]
rs3757656	1.00[ASN][1000 genomes]
rs4289709	1.00[ASN][1000 genomes]
rs4719872	0.92[ASN][1000 genomes]
rs4722607	0.92[ASN][1000 genomes]
rs4722609	0.82[ASN][1000 genomes]
rs6957136	1.00[ASN][1000 genomes]
rs6957786	1.00[ASN][1000 genomes]
rs6968080	1.00[ASN][1000 genomes]
rs6968655	0.91[ASN][1000 genomes]
rs71521775	0.82[ASN][1000 genomes]
rs71521777	0.82[ASN][1000 genomes]
rs73063761	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73063763	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73063769	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73063794	1.00[ASN][1000 genomes]
rs740185	0.82[ASN][1000 genomes]
rs740186	0.82[ASN][1000 genomes]
rs740187	0.82[ASN][1000 genomes]
rs757804	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029596	chr7:26302739-26737913	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	nsv538804	chr7:26302739-26737913	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv1025538	chr7:26482342-27376045	Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases
4	nsv538805	chr7:26482342-27376045	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	213 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:26552800-26556200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr7:26554400-26555600	Enhancers	Fetal Muscle Leg	muscle
3	chr7:26554800-26555600	Enhancers	Sigmoid Colon	Sigmoid Colon
4	chr7:26555200-26561400	Weak transcription	Pancreas	Pancrea
5	chr7:26555400-26555600	Enhancers	Colonic Mucosa	Colon
6	chr7:26555400-26555600	Enhancers	Hela-S3	cervix
7	chr7:26555400-26555800	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr7:26555400-26556400	Weak transcription	Gastric	stomach

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