Variant report

Variant	rs12705120
Chromosome Location	chr7:103019613-103019614
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13240456	1.00[AMR][1000 genomes]
rs17142245	1.00[AMR][1000 genomes]
rs2528860	1.00[AMR][1000 genomes]
rs2535761	1.00[AMR][1000 genomes]
rs2535779	1.00[AMR][1000 genomes]
rs2535782	1.00[AMR][1000 genomes]
rs2711857	1.00[AMR][1000 genomes]
rs2711858	1.00[AMR][1000 genomes]
rs2906636	1.00[AMR][1000 genomes]
rs2965084	1.00[AMR][1000 genomes]
rs2965096	1.00[AMR][1000 genomes]
rs362751	1.00[AMR][1000 genomes]
rs7808975	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:102989800-103021200	Weak transcription	Fetal Heart	heart
2	chr7:103009000-103021000	Weak transcription	Gastric	stomach
3	chr7:103009000-103021000	Weak transcription	Pancreas	Pancrea
4	chr7:103009000-103021200	Weak transcription	Fetal Lung	lung
5	chr7:103009000-103029200	Weak transcription	Spleen	Spleen
6	chr7:103009200-103020800	Weak transcription	HepG2	liver
7	chr7:103010800-103021000	Weak transcription	Duodenum Mucosa	Duodenum
8	chr7:103019000-103020000	Enhancers	K562	blood
9	chr7:103019600-103020400	Enhancers	Primary monocytes fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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